ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies

被引：11
|
作者：
Calinawan, Anna Pamela [1 ]
Song, Xiaoyu [2 ,3 ]
Ji, Jiayi [2 ,3 ]
Dhanasekaran, Saravana Mohan [4 ]
Petralia, Francesca [1 ]
Wang, Pei [1 ]
Reva, Boris [1 ]
机构：
[1] Icahn Sch Med Mt Sinai, Dept Genet & Genom Sci, New York, NY 10029 USA
[2] Icahn Sch Med Mt Sinai, Dept Populat Hlth Sci & Policy, New York, NY 10029 USA
[3] Icahn Sch Med Mt Sinai, Tisch Canc Inst, New York, NY 10029 USA
[4] Univ Michigan, Dept Pathol, Ann Arbor, MI 48109 USA
来源：
PROTEOMICS | 2020年 / 20卷 / 21-22期
关键词：
D O I：
10.1002/pmic.201900359
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
The Clinical Proteomic Tumor Analysis Consortium (CPTAC) initiative has generated extensive multi-omics data resources of deep proteogenomic profiles for multiple cancer types. To enable the broader community of biological and medical researchers to intuitively query, explore, and download data and analysis results from various CPTAC projects, a prototype user-friendly web application called "ProTrack" is built with the CPTAC clear cell renal cell carcinoma (ccRCC) data set (). Here the salient features of this application which provides a dynamic, comprehensive, and granular visualization of the rich proteogenomic data is described.
引用
收藏
页数：5
相关论文
共 50 条
  • [1] The Omics Dashboard for Interactive Exploration of Metabolomics and Multi-Omics Data
    Paley, Suzanne
    Karp, Peter D.
    METABOLITES, 2024, 14 (01)
  • [2] OmicsTIDE: interactive exploration of trends in multi-omics data
    Harbig, Theresa A.
    Fratte, Julian
    Krone, Michael
    Nieselt, Kay
    BIOINFORMATICS ADVANCES, 2023, 3 (01):
  • [3] GraphOmics: an interactive platform to explore and integrate multi-omics data
    Wandy, Joe
    Daly, Ronan
    BMC BIOINFORMATICS, 2021, 22 (01)
  • [4] iNetModels 2.0: an interactive visualization and database of multi-omics data
    Arif, Muhammad
    Zhang, Cheng
    Li, Xiangyu
    Gungor, Cem
    Cakmak, Bugra
    Arslanturk, Metin
    Tebani, Abdellah
    Ozcan, Berkay
    Subas, Oguzhan
    Zhou, Wenyu
    Piening, Brian
    Turkez, Hasan
    Fagerberg, Linn
    Price, Nathan
    Hood, Leroy
    Snyder, Michael
    Nielsen, Jens
    Uhlen, Mathias
    Mardinoglu, Adil
    NUCLEIC ACIDS RESEARCH, 2021, 49 (W1) : W271 - W276
  • [5] GraphOmics: an interactive platform to explore and integrate multi-omics data
    Joe Wandy
    Rónán Daly
    BMC Bioinformatics, 22
  • [6] ‘Multi-omics’ data integration: applications in probiotics studies
    Iliya Dauda Kwoji
    Olayinka Ayobami Aiyegoro
    Moses Okpeku
    Matthew Adekunle Adeleke
    npj Science of Food, 7
  • [7] 'Multi-omics' data integration: applications in probiotics studies
    Kwoji, Iliya Dauda
    Aiyegoro, Olayinka Ayobami
    Okpeku, Moses
    Adeleke, Matthew Adekunle
    NPJ SCIENCE OF FOOD, 2023, 7 (01)
  • [8] Survey on Multi-omics, and Multi-omics Data Analysis, Integration and Application
    Shahrajabian, Mohamad Hesam
    Sun, Wenli
    CURRENT PHARMACEUTICAL ANALYSIS, 2023, 19 (04) : 267 - 281
  • [9] MiBiOmics: an interactive web application for multi-omics data exploration and integration
    Johanna Zoppi
    Jean-François Guillaume
    Michel Neunlist
    Samuel Chaffron
    BMC Bioinformatics, 22
  • [10] MiBiOmics: an interactive web application for multi-omics data exploration and integration
    Zoppi, Johanna
    Guillaume, Jean-Francois
    Neunlist, Michel
    Chaffron, Samuel
    BMC BIOINFORMATICS, 2021, 22 (01)
12345