iNetModels 2.0: an interactive visualization and database of multi-omics data

被引:28
|
作者
Arif, Muhammad [1 ]
Zhang, Cheng [1 ,2 ,3 ]
Li, Xiangyu [1 ]
Gungor, Cem [4 ]
Cakmak, Bugra [4 ]
Arslanturk, Metin [4 ]
Tebani, Abdellah [5 ,6 ]
Ozcan, Berkay [4 ]
Subas, Oguzhan [4 ]
Zhou, Wenyu [7 ]
Piening, Brian [8 ]
Turkez, Hasan [9 ]
Fagerberg, Linn [1 ]
Price, Nathan [10 ]
Hood, Leroy [10 ]
Snyder, Michael [7 ]
Nielsen, Jens [11 ]
Uhlen, Mathias [1 ]
Mardinoglu, Adil [1 ,12 ]
机构
[1] KTH Royal Inst Technol, Sci Life Lab, SE-17121 Stockholm, Sweden
[2] Zhengzhou Univ, Minist Educ, Sch Pharmaceut Sci, Zhengzhou 450001, Henan, Peoples R China
[3] Zhengzhou Univ, Minist Educ, Key Lab Adv Drug Preparat Technol, Zhengzhou 450001, Henan, Peoples R China
[4] Bash Biotech Inc, 600 West Broadway,Suite 700, San Diego, CA USA
[5] Rouen Univ Hosp, Dept Metab Biochem, F-76000 Rouen, France
[6] Normandie Univ, CHU Rouen, INSERM, UNIROUEN,U1245, F-76000 Rouen, France
[7] Stanford Univ, Dept Genet, Stanford, CA 94305 USA
[8] Providence Canc Ctr, Oregon Area, Portland, OR USA
[9] Ataturk Univ, Fac Med, Dept Med Biol, Erzurum, Turkey
[10] Inst Syst Biol, Seattle, WA USA
[11] Chalmers Univ Technol, Dept Biol & Biol Engn, Gothenburg, Sweden
[12] Kings Coll London, Fac Dent Oral & Craniofacial Sci, Ctr Host Microbiome Interact, London SE1 9RT, England
基金
美国国家卫生研究院; 瑞典研究理事会;
关键词
D O I
10.1093/nar/gkab254
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
It is essential to reveal the associations between various omics data for a comprehensive understanding of the altered biological process in human wellness and disease. To date, very few studies have focused on collecting and exhibiting multi-omics associations in a single database. Here, we present iNetModels, an interactive database and visualization platform of Multi-Omics Biological Networks (MOBNs). This platform describes the associations between the clinical chemistry, anthropometric parameters, plasma proteomics, plasma metabolomics, as well as metagenomics for oral and gut microbiome obtained from the same individuals. Moreover, iNetModels includes tissue- and cancer-specific Gene Co-expression Networks (GCNs) for exploring the connections between the specific genes. This platform allows the user to interactively explore a single feature's association with other omics data and customize its particular context (e.g. male/female specific). The users can also register their data for sharing and visualization of the MOBNs and GCNs. Moreover, iNetModels allows users who do not have a bioinformatics background to facilitate human wellness and disease research. iNetModels can be accessed freely at https://inetmodels.com without any limitation.
引用
收藏
页码:W271 / W276
页数:6
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