Complete genome sequence of Microbulbifer sp CCB-MM1, a halophile isolated from Matang Mangrove Forest, Malaysia

被引:14
|
作者
Moh, Tsu Horng [1 ]
Lau, Nyok-Sean [1 ]
Furusawa, Go [1 ]
Amirul, Al-Ashraf Abdullah [1 ,2 ]
机构
[1] Univ Sains Malaysia, Ctr Chem Biol, George Town 11900, Malaysia
[2] Univ Sains Malaysia, Sch Biol Sci, George Town 11800, Malaysia
来源
关键词
Complete genome sequence; Microbulbifer; Halophile; Mangrove; Estuarine sediment; SP-NOV; CELL-SHAPE; ENZYMATIC MODIFICATION; ECTOINE BIOSYNTHESIS; BACILLUS-SUBTILIS; BACTERIA; GENES; MREB; IDENTIFICATION; ALIGNMENT;
D O I
10.1186/s40793-017-0248-0
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Microbulbifer sp. CCB-MM1 is a halophile isolated from estuarine sediment of Matang Mangrove Forest, Malaysia. Based on 16S rRNA gene sequence analysis, strain CCB-MM1 is a potentially new species of genus Microbulbifer. Here we describe its features and present its complete genome sequence with annotation. The genome sequence is 3. 86 Mb in size with GC content of 58.85%, harbouring 3313 protein coding genes and 92 RNA genes. A total of 71 genes associated with carbohydrate active enzymes were found using dbCAN. Ectoine biosynthetic genes, ectABC operon and ask_ect were detected using antiSMASH 3.0. Cell shape determination genes, mreBCD operon, rodA and rodZ were annotated, congruent with the rod-coccus cell cycle of the strain CCB-MM1. In addition, putative mreBCD operon regulatory gene, bolA was detected, which might be associated with the regulation of rod-coccus cell cycle observed from the strain.
引用
收藏
页数:9
相关论文
共 50 条
  • [41] Complete genome sequence of Flavobacteriaceae sp. strain GF1, isolated from the phycosphere of a coral endosymbiotic dinoflagellate
    Takagi, Toshiyuki
    Aoyama, Kako
    Motone, Keisuke
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2025, 14 (02)
  • [42] The complete genome sequence of Sedimentibacter sp. strain MB35-C1, isolated from the sewage sludge
    Zhang, Rui
    Wu, Chih-Hung
    Shih, Chao-Jen
    Wu, Yen-Chi
    Lai, Shu-Jung
    You, Yi-Ting
    Chen, Sheng-Chung
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (07):
  • [43] Complete Genome Sequence of Geobacillus sp. Strain E55-1, Isolated from Mine Geyser in Japan
    Miyazaki, Kentaro
    Hase, Erina
    Tokito, Natsuko
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (20):
  • [44] Complete genome sequence of a tellurate reducing bacteria Sporosarcina sp. Te-1 isolated from Bohai Sea
    Wang, Zhongkuan
    Yi, Xianliang
    Liu, Yang
    Zhou, Hao
    MARINE GENOMICS, 2021, 60
  • [45] Complete Genome Sequence of Marinobacter sp. CP1, Isolated from a Self-Regenerating Biocathode Biofilm
    Wang, Zheng
    Eddie, Brian J.
    Malanoski, Anthony P.
    Hervey, W. Judson
    Lin, Baochuan
    Strycharz-Glaven, Sarah M.
    GENOME ANNOUNCEMENTS, 2015, 3 (05)
  • [46] Complete Genome Sequence of Kyrpidia sp. Strain EA-1, a Thermophilic Knallgas Bacterium, Isolated from the Azores
    Reiner, Johannes Eberhard
    Lapp, Christian Jonas
    Bunk, Boyke
    Sproeer, Cathrin
    Overmann, Joerg
    Gescher, Johannes
    GENOME ANNOUNCEMENTS, 2018, 6 (03)
  • [47] Complete genome sequence of Sphingomonas sp. strain R1, a bacterium isolated from tomato (Solanum lycopersicum)
    Yen, Hsi-Ching
    Wang, Si-Chong
    Chen, Wen-Ming
    Lai, Erh-Min
    Kuo, Chih-Horng
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (07):
  • [48] Complete Genome Sequence of Streptomyces lunaelactis MM109(T), Isolated from Cave Moonmilk Deposits
    Naome, Aymeric
    Maciejewska, Marta
    Calusinska, Magdalena
    Martinet, Loic
    Anderssen, Sinaeda
    Adam, Delphine
    Tenconi, Elodie
    Deflandre, Benoit
    Coppieters, Wouter
    Karim, Latifa
    Hanikenne, Marc
    Baurain, Denis
    Delfosse, Philippe
    van Wezel, Gilles P.
    Rigali, Sebastien
    GENOME ANNOUNCEMENTS, 2018, 6 (21)
  • [49] Complete genome sequence of Paenibacillus sp. VCA1 isolated from crater lake of the El Chichon Volcano
    Martinez-Lopez, Nancy Abril
    Pena-Ocana, Betsy Anaid
    Garcia-Contreras, Rodolfo
    Maeda, Toshinari
    Rincon-Rosales, Reiner
    Cazares, Adrian
    Hoshiko, Yuki
    Ruiz-Valdiviezo, Victor Manuel
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2023,
  • [50] Complete Genome Sequence of Magnetospirillum sp. Strain XM-1,Isolated from the Xi'an City Moat, China
    Wang, Yinzhao
    Zhang, Tongwei
    Lin, Wei
    Zhang, Bingfang
    Cai, Yao
    Yang, Caiyun
    Li, Jinhua
    Xu, Huangtao
    Pan, Yongxin
    GENOME ANNOUNCEMENTS, 2016, 4 (05)