Complete genome sequence of Microbulbifer sp CCB-MM1, a halophile isolated from Matang Mangrove Forest, Malaysia

被引:14
|
作者
Moh, Tsu Horng [1 ]
Lau, Nyok-Sean [1 ]
Furusawa, Go [1 ]
Amirul, Al-Ashraf Abdullah [1 ,2 ]
机构
[1] Univ Sains Malaysia, Ctr Chem Biol, George Town 11900, Malaysia
[2] Univ Sains Malaysia, Sch Biol Sci, George Town 11800, Malaysia
来源
关键词
Complete genome sequence; Microbulbifer; Halophile; Mangrove; Estuarine sediment; SP-NOV; CELL-SHAPE; ENZYMATIC MODIFICATION; ECTOINE BIOSYNTHESIS; BACILLUS-SUBTILIS; BACTERIA; GENES; MREB; IDENTIFICATION; ALIGNMENT;
D O I
10.1186/s40793-017-0248-0
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Microbulbifer sp. CCB-MM1 is a halophile isolated from estuarine sediment of Matang Mangrove Forest, Malaysia. Based on 16S rRNA gene sequence analysis, strain CCB-MM1 is a potentially new species of genus Microbulbifer. Here we describe its features and present its complete genome sequence with annotation. The genome sequence is 3. 86 Mb in size with GC content of 58.85%, harbouring 3313 protein coding genes and 92 RNA genes. A total of 71 genes associated with carbohydrate active enzymes were found using dbCAN. Ectoine biosynthetic genes, ectABC operon and ask_ect were detected using antiSMASH 3.0. Cell shape determination genes, mreBCD operon, rodA and rodZ were annotated, congruent with the rod-coccus cell cycle of the strain CCB-MM1. In addition, putative mreBCD operon regulatory gene, bolA was detected, which might be associated with the regulation of rod-coccus cell cycle observed from the strain.
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页数:9
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