Complete genome sequence of Microbulbifer sp CCB-MM1, a halophile isolated from Matang Mangrove Forest, Malaysia

被引:14
|
作者
Moh, Tsu Horng [1 ]
Lau, Nyok-Sean [1 ]
Furusawa, Go [1 ]
Amirul, Al-Ashraf Abdullah [1 ,2 ]
机构
[1] Univ Sains Malaysia, Ctr Chem Biol, George Town 11900, Malaysia
[2] Univ Sains Malaysia, Sch Biol Sci, George Town 11800, Malaysia
来源
关键词
Complete genome sequence; Microbulbifer; Halophile; Mangrove; Estuarine sediment; SP-NOV; CELL-SHAPE; ENZYMATIC MODIFICATION; ECTOINE BIOSYNTHESIS; BACILLUS-SUBTILIS; BACTERIA; GENES; MREB; IDENTIFICATION; ALIGNMENT;
D O I
10.1186/s40793-017-0248-0
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Microbulbifer sp. CCB-MM1 is a halophile isolated from estuarine sediment of Matang Mangrove Forest, Malaysia. Based on 16S rRNA gene sequence analysis, strain CCB-MM1 is a potentially new species of genus Microbulbifer. Here we describe its features and present its complete genome sequence with annotation. The genome sequence is 3. 86 Mb in size with GC content of 58.85%, harbouring 3313 protein coding genes and 92 RNA genes. A total of 71 genes associated with carbohydrate active enzymes were found using dbCAN. Ectoine biosynthetic genes, ectABC operon and ask_ect were detected using antiSMASH 3.0. Cell shape determination genes, mreBCD operon, rodA and rodZ were annotated, congruent with the rod-coccus cell cycle of the strain CCB-MM1. In addition, putative mreBCD operon regulatory gene, bolA was detected, which might be associated with the regulation of rod-coccus cell cycle observed from the strain.
引用
收藏
页数:9
相关论文
共 50 条
  • [21] Complete genome sequence of a putative novel cytorhabdovirus isolated from Rudbeckia sp.
    Da-Som Lee
    Juhyun Kim
    Minji Jun
    Sanghyun Shin
    Seong-Jin Lee
    Seungmo Lim
    Archives of Virology, 2022, 167 : 2381 - 2385
  • [22] Genome sequence data of Bacillus sp. CCB-MMP212 isolated from Malaysian mangrove: A potential strain in arsenic resistance with ArsI, C.As lyase
    Azami, Nor Azura
    Lau, Nyok-Sean
    Furusawa, Go
    DATA IN BRIEF, 2022, 45
  • [23] Complete Genome Sequence of the Putative Phosphonate Producer Streptomyces sp. Strain I6, Isolated from Indonesian Mangrove Sediment
    Krause, Janina
    Ratnakomala, Shanti
    Lisdiyanti, Puspita
    Ort-Winklbauer, Regina
    Wohlleben, Wolfgang
    Mast, Yvonne
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2019, 8 (04):
  • [24] Genome Sequence Analysis of Exiguobacterium sp. Strain TBG-PICH-001, Isolated from Pichavaram Mangrove Forest in South India
    Sugathan, Shiburaj
    Salim, Sajna
    Srivastava, Nitin
    Ravindran, Prakashkumar
    Khare, Sunil K.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2022, 11 (05):
  • [25] Complete Genome Sequence of a New Clostridium sp. Isolated from Anaerobic Digestion and Biomethanation
    Hahnke, Sarah
    Abendroth, Christian
    Pascual, Javier
    Langer, Thomas
    Ramm, Patrice
    Klocke, Michael
    Luschnig, Olaf
    Porcar, Manuel
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (03):
  • [26] Complete Genome Sequence of Arcanobacterium sp. Strain 2701, Isolated from a Harbor Seal
    Borowiak, Maria
    Alssahen, Mazen
    Hassan, Abdulwahed Ahmed
    Laemmler, Christoph
    Sammra, Osama
    Malorny, Burkhard
    Uelze, Laura
    Kreitlow, Antonia
    Prenger-Berninghoff, Ellen
    Siebert, Ursula
    Ploetz, Madeleine
    Abdulmawjood, Amir
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (38):
  • [27] Complete Genome Sequence of Streptomyces sp. Strain SHP22-7, a New Species Isolated from Mangrove of Enggano Island, Indonesia
    Handayani, Ira
    Ratnakomala, Shanti
    Lisdiyanti, Puspita
    Fahrurrozi
    Kusharyoto, Wien
    Alanjary, Mohammad
    Ort-Winklbauer, Regina
    Kulik, Andreas
    Wohlleben, Wolfgang
    Mast, Yvonne
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2018, 7 (20):
  • [28] Complete Genome Sequence of Curtobacterium sp. Strain TXMA1, Isolated from a Grapevine in Texas, USA
    Chen, Jianchi
    Ledbetter, Craig
    O'Leary, Michael
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2022, 11 (01):
  • [29] Complete Genome Sequence of Bacillus sp. Strain KICET-1, Isolated from Soybean Paste (Doenjang)
    Park, Hyojung
    Lee, Young-Ran
    Kim, Yeonsoo
    Won, Jong In
    Lee, Sun-A
    Jeon, Byoung Seung
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2023, 12 (06):
  • [30] Complete genome sequence of Listeria seeligeri strain 43-1 isolated from a Danish forest freshwater swamp
    Tang, Taya
    Leisner, Jorgen J.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (07):