Vesper: Global and Local Cryo-Em Map Alignment and Database Search using Local Density Vectors

被引：0
|
作者：
Terashi, Genki [1 ]
Han, Xusi [1 ]
Christoffer, Charles [2 ]
Chen, Siyang [2 ]
Kihara, Daisuke [3 ]
机构：
[1] Purdue Univ, Biol Sci, W Lafayette, IN 47907 USA
[2] Purdue Univ, Comp Sci, W Lafayette, IN 47907 USA
[3] Purdue Univ, Biol Sci & Comp Sci, W Lafayette, IN 47907 USA
来源：
BIOPHYSICAL JOURNAL | 2021年 / 120卷 / 03期
关键词：
D O I：
暂无
中图分类号：
Q6 [生物物理学];
学科分类号：
071011 ;
摘要：
410-Pos
引用
收藏
页码：84A / 84A
页数：1
相关论文
共 50 条
  • [21] Cryo-EM model validation using independent map reconstructions
    DiMaio, Frank
    Zhang, Junjie
    Chiu, Wah
    Baker, David
    PROTEIN SCIENCE, 2013, 22 (06) : 865 - 868
  • [22] Local heterogeneity analysis of crystallographic and cryo-EM maps using shell-approximation
    Lunin, Vladimir Y.
    Lunina, Natalia L.
    Urzhumtsev, Alexandre G.
    CURRENT RESEARCH IN STRUCTURAL BIOLOGY, 2023, 6
  • [23] Fitting Atomic Structures into Cryo-EM Maps by Coupling Deep Learning-Enhanced Map Processing with Global-Local Optimization
    Cai, Yaxian
    Zhang, Ziying
    Xu, Xiangyu
    Xu, Liang
    Chen, Yu
    Zhang, Guijun
    Zhou, Xiaogen
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2025,
  • [24] Local computational methods to improve the interpretability and analysis of cryo-EM maps
    Kaur, Satinder
    Gomez-Blanco, Josue
    Khalifa, Ahmad A. Z.
    Adinarayanan, Swathi
    Sanchez-Garcia, Ruben
    Wrapp, Daniel
    McLellan, Jason S.
    Bui, Khanh Huy
    Vargas, Javier
    NATURE COMMUNICATIONS, 2021, 12 (01)
  • [25] Automatic local resolution-based sharpening of cryo-EM maps
    Ramirez-Aportela, Erney
    Luis Vilas, Jose
    Glukhova, Alisa
    Melero, Roberto
    Conesa, Pablo
    Martinez, Marta
    Maluenda, David
    Mota, Javier
    Jimenez, Amaya
    Vargas, Javier
    Marabini, Roberto
    Sexton, Patrick M.
    Maria Carazo, Jose
    Sorzano, Carlos Oscar S.
    BIOINFORMATICS, 2020, 36 (03) : 765 - 772
  • [26] Local computational methods to improve the interpretability and analysis of cryo-EM maps
    Satinder Kaur
    Josue Gomez-Blanco
    Ahmad A. Z. Khalifa
    Swathi Adinarayanan
    Ruben Sanchez-Garcia
    Daniel Wrapp
    Jason S. McLellan
    Khanh Huy Bui
    Javier Vargas
    Nature Communications, 12
  • [27] MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with Symmetry
    Terashi, Genki
    Kagaya, Yuki
    Kihara, Daisuke
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2020, 60 (05) : 2634 - 2643
  • [28] Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions
    Pintilie, Grigore D.
    Zhang, Junjie
    Goddard, Thomas D.
    Chiu, Wah
    Gossard, David C.
    JOURNAL OF STRUCTURAL BIOLOGY, 2010, 170 (03) : 427 - 438
  • [29] Auto3DCryoMap: an automated particle alignment approach for 3D cryo-EM density map reconstruction
    Adil Al-Azzawi
    Anes Ouadou
    Ye Duan
    Jianlin Cheng
    BMC Bioinformatics, 21
  • [30] Auto3DCryoMap: an automated particle alignment approach for 3D cryo-EM density map reconstruction
    Al-Azzawi, Adil
    Ouadou, Anes
    Duan, Ye
    Cheng, Jianlin
    BMC BIOINFORMATICS, 2020, 21 (Suppl 21)
12345