Blunt-ended DNA stacking interactions in a 3-helix motif

被引：34
|
作者：
Wang, Risheng [1 ]
Kuzuya, Akinori [2 ]
Liu, Wenyan [1 ]
Seeman, Nadrian C. [1 ]
机构：
[1] NYU, Dept Chem, New York, NY 10003 USA
[2] Univ Tokyo, Res Ctr Adv Sci & Technol, Meguro Ku, Tokyo 1538904, Japan
来源：
CHEMICAL COMMUNICATIONS | 2010年 / 46卷 / 27期
基金：
美国国家科学基金会;
关键词：
CRYSTALS; MOLECULE; PROTEIN; DESIGN;
D O I：
10.1039/c0cc01167c
中图分类号：
O6 [化学];
学科分类号：
0703 ;
摘要：
We demonstrate that intermolecular stacking is capable of forming one-dimensional arrays of a blunt-ended 3-helix DNA motif. The array can be visualized in the atomic force microscopy through conjugated streptavidin nanoparticles. We estimate the strength of the triple stacking interaction to be -8.6 kcal mol(-1).
引用
收藏
页码：4905 / 4907
页数：3
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共 33 条
  • [1] RAPID AND EFFICIENT METHOD FOR CLONING OF BLUNT-ENDED DNA FRAGMENTS
    UPCROFT, P
    HEALEY, A
    GENE, 1987, 51 (01) : 69 - 75
  • [2] Optimum conditions for cloning of blunt-ended DNA fragments.
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  • [3] PROTOCOLS FOR CLONING AND ANALYSIS OF BLUNT-ENDED PCR-GENERATED DNA FRAGMENTS
    COSTA, GL
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    Dietrich, R
    Wirsching, F
    Opitz, T
    Schwienhorst, A
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