New models for human disease from the International Mouse Phenotyping Consortium

被引:48
|
作者
Cacheiro, Pilar [1 ]
Haendel, Melissa A. [2 ,3 ]
Smedley, Damian [1 ]
Meehan, Terrence
Mason, Jeremy
Mashhadi, Hamed Haseli
Munoz-Fuentes, Violeta
Tocchini, Glauco
Lloyd, Kent K. C.
McKerlie, Colin
Bower, Lynette
Clary, Dave
Nutter, Lauryl M. J.
Flenniken, Ann M.
Teboul, Lydia
Codner, Gemma
Wells, Sara
Herault, Yann
Sorg, Tania
Vasseurm, Laurent
Selloum, Mohammed
Roux, Michel
Jacobs, Hugues
Meziane, Hamid
Champy, Marie-France
About, Ghina Bou
Murray, Steve
Chesler, Elissa
Kumar, Vivek
White, Jacqui
Braun, Robert E.
Beaudet, Arthur L.
Dickinson, Mary E.
Heaney, Jason D.
Lorenzo, Isabel
Lanza, Denise G.
Reynolds, Corey L.
Ward, Christopher S.
Samaco, Rodney C.
Veeraragavan, Surabi
Hsu, Chih-Wei
Christianson, Audrey E.
Gallegos, Juan J.
Seavitt, John Richard
Gaspero, Angelina
Green, Jennie R.
Garza
Garza, Arturo
Bohat, Ritu
Sedlacek, Radislav
机构
[1] Queen Mary Univ London, Sch Med & Dent, William Harvey Res Inst, London, England
[2] Oregon State Univ, Linus Pauling Inst, Corvallis, OR 97331 USA
[3] Oregon State Univ, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
基金
美国国家卫生研究院;
关键词
INFORMATICS PLATFORM; PLEIOTROPY; DISCOVERY;
D O I
10.1007/s00335-019-09804-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The International Mouse Phenotyping Consortium (IMPC) continues to expand the catalogue of mammalian gene function by conducting genome and phenome-wide phenotyping on knockout mouse lines. The extensive and standardized phenotype screens allow the identification of new potential models for human disease through cross-species comparison by computing the similarity between the phenotypes observed in the mutant mice and the human phenotypes associated to their orthologous loci in Mendelian disease. Here, we present an update on the novel disease models available from the most recent data release (DR10.0), with 5861 mouse genes fully or partially phenotyped and a total number of 69,982 phenotype calls reported. With approximately one-third of human Mendelian genes with orthologous null mouse phenotypes described, the range of available models relevant for human diseases keeps increasing. Among the breadth of new data, we identify previously uncharacterized disease genes in the mouse and additional phenotypes for genes with existing mutant lines mimicking the associated disorder. The automated and unbiased discovery of relevant models for all types of rare diseases implemented by the IMPC constitutes a powerful tool for human genetics and precision medicine.
引用
收藏
页码:143 / 150
页数:8
相关论文
共 50 条
  • [21] The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
    Koscielny, Gautier
    Yaikhom, Gagarine
    Iyer, Vivek
    Meehan, Terrence F.
    Morgan, Hugh
    Atienza-Herrero, Julian
    Blake, Andrew
    Chen, Chao-Kung
    Easty, Richard
    Di Fenza, Armida
    Fiegel, Tanja
    Grifiths, Mark
    Horne, Alan
    Karp, Natasha A.
    Kurbatova, Natalja
    Mason, Jeremy C.
    Matthews, Peter
    Oakley, Darren J.
    Qazi, Asfand
    Regnart, Jack
    Retha, Ahmad
    Santos, Luis A.
    Sneddon, Duncan J.
    Warren, Jonathan
    Westerberg, Henrik
    Wilson, Robert J.
    Melvin, David G.
    Smedley, Damian
    Brown, Steve D. M.
    Flicek, Paul
    Skarnes, William C.
    Mallon, Ann-Marie
    Parkinson, Helen
    NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) : D802 - D809
  • [22] The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservation
    Munoz-Fuentes, Violeta
    Cacheiro, Pilar
    Meehan, Terrence F.
    Aguilar-Pimentel, Juan Antonio
    Brown, Steve D. M.
    Flenniken, Ann M.
    Flicek, Paul
    Galli, Antonella
    Mashhadi, Hamed Haseli
    de Angelis, Martin Hrabe
    Kim, Jong Kyoung
    Lloyd, K. C. Kent
    McKerlie, Colin
    Morgan, Hugh
    Murray, Stephen A.
    Nutter, Lauryl M. J.
    Reilly, Patrick T.
    Seavitt, John R.
    Seong, Je Kyung
    Simon, Michelle
    Wardle-Jones, Hannah
    Mallon, Ann-Marie
    Smedley, Damian
    Parkinson, Helen E.
    CONSERVATION GENETICS, 2018, 19 (04) : 995 - 1005
  • [23] The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservation
    Violeta Muñoz-Fuentes
    Pilar Cacheiro
    Terrence F. Meehan
    Juan Antonio Aguilar-Pimentel
    Steve D. M. Brown
    Ann M. Flenniken
    Paul Flicek
    Antonella Galli
    Hamed Haseli Mashhadi
    Martin Hrabě de Angelis
    Jong Kyoung Kim
    K. C. Kent Lloyd
    Colin McKerlie
    Hugh Morgan
    Stephen A. Murray
    Lauryl M. J. Nutter
    Patrick T. Reilly
    John R. Seavitt
    Je Kyung Seong
    Michelle Simon
    Hannah Wardle-Jones
    Ann-Marie Mallon
    Damian Smedley
    Helen E. Parkinson
    Conservation Genetics, 2018, 19 : 995 - 1005
  • [24] Behavioral phenotyping of mouse models of Parkinson's disease
    Taylor, Tonya N.
    Greene, James G.
    Miller, Gary W.
    BEHAVIOURAL BRAIN RESEARCH, 2010, 211 (01) : 1 - 10
  • [25] Correction to: The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservation
    Violeta Muñoz-Fuentes
    Pilar Cacheiro
    Terrence F. Meehan
    Juan Antonio Aguilar-Pimentel
    Arthur L. Beaudet
    Steve D. M. Brown
    Mary E. Dickinson
    Ann M. Flenniken
    Paul Flicek
    Antonella Galli
    Hamed Haseli Mashhadi
    Jason D. Heaney
    Martin Hrabě de Angelis
    Jong Kyoung Kim
    K. C. Kent Lloyd
    Colin McKerlie
    Hugh Morgan
    Stephen A. Murray
    Lauryl M. J. Nutter
    Patrick T. Reilly
    John R. Seavitt
    Je Kyung Seong
    Michelle Simon
    Hannah Wardle-Jones
    Ann-Marie Mallon
    Damian Smedley
    Helen E. Parkinson
    Conservation Genetics, 2019, 20 : 135 - 136
  • [26] The German Mouse Clinic as a platform for standardized phenotyping of mouse models of human diseases
    Quintanilla-Martinez, L.
    PATHOLOGY RESEARCH AND PRACTICE, 2007, 203 (05) : 345 - 345
  • [27] Gene Knockouts Affecting Mitochondrial Proteins Account for Significant Embryonic and Neonatal Lethality: Data From the International Mouse Phenotyping Consortium
    Phoon, Colin K.
    Ren, Mindong
    CIRCULATION, 2019, 140
  • [28] Comprehensive phenotyping of mouse models
    Sorg, Tania
    Ayadi, Abdel
    Jacquot, Sylvie
    Bedu, Elodie
    Combe, Roy
    Fricker, Bastien
    Meziane, Hamid
    Selloum, Mohammed
    Herault, Yann
    TRANSGENIC RESEARCH, 2011, 20 (05) : 1159 - 1159
  • [29] Commentary: The International Mouse Phenotyping Consortium: high-throughput in vivo functional annotation of the mammalian genome
    Lloyd, K. C. Kent
    MAMMALIAN GENOME, 2024, 35 (04) : 537 - 543
  • [30] The mouse metabolic phenotyping center (MMPC) live consortium: an NIH resource for in vivo characterization of mouse models of diabetes and obesity
    Laughlin, Maren
    Mcindoe, Richard
    Adams, Sean H.
    Araiza, Renee
    Ayala, Julio E.
    Kennedy, Lucy
    Lanoue, Louise
    Lantier, Louise
    Macy, James
    Malabanan, Eann
    Mcguinness, Owen P.
    Perry, Rachel
    Port, Daniel
    Qi, Nathan
    Elias, Carol F.
    Shulman, Gerald I.
    Wasserman, David H.
    Lloyd, K. C. Kent
    MAMMALIAN GENOME, 2024, 35 (04) : 485 - 496