Approximate Bayesian Computation (ABC) in practice

被引:799
|
作者
Csillery, Katalin [1 ]
Blum, Michael G. B. [1 ]
Gaggiotti, Oscar E. [2 ]
Francois, Olivier [1 ]
机构
[1] Univ Grenoble 1, CNRS, UMR5525, Lab Tech Ingn Med & Complex, F-38706 La Tronche, France
[2] Univ Grenoble 1, CNRS, UMR5553, Lab Ecol Alpine, F-38041 Grenoble, France
关键词
CHAIN MONTE-CARLO; DNA-SEQUENCE DATA; GENETIC DIVERSITY; MODEL SELECTION; DROSOPHILA-MELANOGASTER; STATISTICAL EVALUATION; COALESCENT SIMULATION; DEMOGRAPHIC HISTORY; POPULATION HISTORY; DYNAMICAL-SYSTEMS;
D O I
10.1016/j.tree.2010.04.001
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Understanding the forces that influence natural variation within and among populations has been a major objective of evolutionary biologists for decades. Motivated by the growth in computational power and data complexity, modern approaches to this question make intensive use of simulation methods. Approximate Bayesian Computation (ABC) is one of these methods. Here we review the foundations of ABC, its recent algorithmic developments, and its applications in evolutionary biology and ecology. We argue that the use of ABC should incorporate all aspects of Bayesian data analysis: formulation, fitting, and improvement of a model. ABC can be a powerful tool to make inferences with complex models if these principles are carefully applied.
引用
收藏
页码:410 / 418
页数:9
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