Screening of prognostic biomarkers for endometrial carcinoma based on a ceRNA network

被引:10
|
作者
Zheng, Ming-Jun
Gou, Rui
Zhang, Wen-Chao
Nie, Xin
Wang, Jing
Gao, Ling-Ling
Liu, Juan-Juan
Li, Xiao
Lin, Bei [1 ]
机构
[1] China Med Univ, Shengjing Hosp, Dept Gynaecol & Obstet, Shenyang 110001, Liaoning, Peoples R China
来源
PEERJ | 2018年 / 6卷
关键词
Endometrial carcinoma; ceRNA network; Prognostic biomarker; CANCER-CELL-GROWTH; GENE-EXPRESSION; PHOSPHOSERINE AMINOTRANSFERASE; INTEGRATIVE ANALYSIS; SURVIVAL;
D O I
10.7717/peerj.6091
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Objective. This study aims to reveal the regulation network of lncRNAs-miRNAs-mRNA in endometrial carcinoma (EC), to investigate the underlying mechanisms of EC occurrence and progression, to screen prognostic biomarkers. Methods. RNA-seq and miRNA-seq data of endometrial carcinoma were downloaded from the TCGA database. Edge.R package was used to screen differentially expressed genes. A database was searched to determine differentially expressed lncRNA-miRNA and miRNA-mRNA pairs, to construct the topological network of ceRNA, and to elucidate the key RNAs that are for a prognosis of survival. Results. We screened out 2632 mRNAs, 1178 lncRNAs and 189 miRNAs that were differentially expressed. The constructed ceRNA network included 97 lncRNAs, 20 miRNAs and 73 mRNAs. Analyzing network genes for associations with prognosies revealed 169 prognosis-associated RNAs, including 92 lncRNAs, 16miRNAs and 61 mRNAs. Conclusion. Our results reveal new potential mechanisms underlying the carcinogenesis and progression of endometrial carcinoma.
引用
收藏
页数:20
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