Screening of prognostic biomarkers for endometrial carcinoma based on a ceRNA network

被引:10
|
作者
Zheng, Ming-Jun
Gou, Rui
Zhang, Wen-Chao
Nie, Xin
Wang, Jing
Gao, Ling-Ling
Liu, Juan-Juan
Li, Xiao
Lin, Bei [1 ]
机构
[1] China Med Univ, Shengjing Hosp, Dept Gynaecol & Obstet, Shenyang 110001, Liaoning, Peoples R China
来源
PEERJ | 2018年 / 6卷
关键词
Endometrial carcinoma; ceRNA network; Prognostic biomarker; CANCER-CELL-GROWTH; GENE-EXPRESSION; PHOSPHOSERINE AMINOTRANSFERASE; INTEGRATIVE ANALYSIS; SURVIVAL;
D O I
10.7717/peerj.6091
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Objective. This study aims to reveal the regulation network of lncRNAs-miRNAs-mRNA in endometrial carcinoma (EC), to investigate the underlying mechanisms of EC occurrence and progression, to screen prognostic biomarkers. Methods. RNA-seq and miRNA-seq data of endometrial carcinoma were downloaded from the TCGA database. Edge.R package was used to screen differentially expressed genes. A database was searched to determine differentially expressed lncRNA-miRNA and miRNA-mRNA pairs, to construct the topological network of ceRNA, and to elucidate the key RNAs that are for a prognosis of survival. Results. We screened out 2632 mRNAs, 1178 lncRNAs and 189 miRNAs that were differentially expressed. The constructed ceRNA network included 97 lncRNAs, 20 miRNAs and 73 mRNAs. Analyzing network genes for associations with prognosies revealed 169 prognosis-associated RNAs, including 92 lncRNAs, 16miRNAs and 61 mRNAs. Conclusion. Our results reveal new potential mechanisms underlying the carcinogenesis and progression of endometrial carcinoma.
引用
收藏
页数:20
相关论文
共 50 条
  • [31] Comprehensive analysis of an mRNA co-expression network and a ceRNA network reveals potential prognostic biomarkers in oral squamous cell carcinoma
    He, Liming
    Jiang, Zhisheng
    Gao, Yijun
    Zeng, Yiyu
    Ge, Wenhui
    Yu, Yi
    Xie, Xiaoyan
    EGYPTIAN JOURNAL OF MEDICAL HUMAN GENETICS, 2024, 25 (01)
  • [32] Detection of Prognostic Biomarkers for Hepatocellular Carcinoma through CircRNA-associated CeRNA Analysis
    Han, Li
    Wang, Maolong
    Yang, Yuling
    Xu, Hanlin
    Wei, Lili
    Huang, Xia
    JOURNAL OF CLINICAL AND TRANSLATIONAL HEPATOLOGY, 2022, 10 (01) : 80 - 89
  • [33] Identification of ceRNA network based on a RNA-seq shows prognostic lncRNA biomarkers in human lung adenocarcinoma
    Li, Xing
    Li, Bing
    Ran, Pixin
    Wang, Lanying
    ONCOLOGY LETTERS, 2018, 16 (05) : 5697 - 5708
  • [34] Integrated Analysis of ceRNA Network Reveals Prognostic and Metastasis Associated Biomarkers in Breast Cancer
    Qian, Da
    Zheng, Qinghui
    Wu, Danping
    Ye, Buyun
    Qian, Yangyang
    Zhou, Tao
    Qiu, Jie
    Meng, Xuli
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [35] Construction and comprehensive analysis of a ceRNA network to reveal potential prognostic biomarkers for lung adenocarcinoma
    Lei Gao
    Ling Zhang
    BMC Cancer, 21
  • [36] Screening key prognostic factors and constructing survival prognostic risk prediction model based on ceRNA network in early lung adenocarcinoma
    Bai, Juncheng
    Zhu, Xiaochun
    Zhang, Jintao
    Bulin, Baila
    TRANSLATIONAL CANCER RESEARCH, 2021, 10 (11) : 4652 - 4663
  • [37] Construction and comprehensive analysis of a ceRNA network to reveal potential prognostic biomarkers for lung adenocarcinoma
    Gao, Lei
    Zhang, Ling
    BMC CANCER, 2021, 21 (01)
  • [38] Screening and Identification of Potential Prognostic Biomarkers in Adrenocortical Carcinoma
    Xu, Wen-Hao
    Wu, Junlong
    Wang, Jun
    Wan, Fang-Ning
    Wang, Hong-Kai
    Cao, Da-Long
    Qu, Yuan-Yuan
    Zhang, Hai-Liang
    Ye, Ding-Wei
    FRONTIERS IN GENETICS, 2019, 10
  • [39] Identifying Dysregulated lncRNA-Associated ceRNA Network Biomarkers in CML Based on Dynamical Network Biomarkers
    Xu, Junhua
    Wu, Min
    Sun, Yichen
    Zhao, Hongqian
    Wang, Yujie
    Gao, Jie
    BIOMED RESEARCH INTERNATIONAL, 2020, 2020
  • [40] Explore prognostic marker of colorectal cancer based on ceRNA network
    Ke, Mu-Jing
    Ji, Lian-Dong
    Li, Yi-Xiong
    JOURNAL OF CELLULAR BIOCHEMISTRY, 2019, 120 (12) : 19358 - 19370