Screening of prognostic biomarkers for endometrial carcinoma based on a ceRNA network

被引:10
|
作者
Zheng, Ming-Jun
Gou, Rui
Zhang, Wen-Chao
Nie, Xin
Wang, Jing
Gao, Ling-Ling
Liu, Juan-Juan
Li, Xiao
Lin, Bei [1 ]
机构
[1] China Med Univ, Shengjing Hosp, Dept Gynaecol & Obstet, Shenyang 110001, Liaoning, Peoples R China
来源
PEERJ | 2018年 / 6卷
关键词
Endometrial carcinoma; ceRNA network; Prognostic biomarker; CANCER-CELL-GROWTH; GENE-EXPRESSION; PHOSPHOSERINE AMINOTRANSFERASE; INTEGRATIVE ANALYSIS; SURVIVAL;
D O I
10.7717/peerj.6091
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Objective. This study aims to reveal the regulation network of lncRNAs-miRNAs-mRNA in endometrial carcinoma (EC), to investigate the underlying mechanisms of EC occurrence and progression, to screen prognostic biomarkers. Methods. RNA-seq and miRNA-seq data of endometrial carcinoma were downloaded from the TCGA database. Edge.R package was used to screen differentially expressed genes. A database was searched to determine differentially expressed lncRNA-miRNA and miRNA-mRNA pairs, to construct the topological network of ceRNA, and to elucidate the key RNAs that are for a prognosis of survival. Results. We screened out 2632 mRNAs, 1178 lncRNAs and 189 miRNAs that were differentially expressed. The constructed ceRNA network included 97 lncRNAs, 20 miRNAs and 73 mRNAs. Analyzing network genes for associations with prognosies revealed 169 prognosis-associated RNAs, including 92 lncRNAs, 16miRNAs and 61 mRNAs. Conclusion. Our results reveal new potential mechanisms underlying the carcinogenesis and progression of endometrial carcinoma.
引用
收藏
页数:20
相关论文
共 50 条
  • [21] Identification of prognostic biomarkers associated with tumor microenvironment in ceRNA network for esophageal squamous cell carcinoma: a bioinformatics study based on TCGA database
    Song, Danlei
    Wei, Yongjian
    Hu, Yuping
    Chen, Xia
    Zheng, Ya
    Liu, Min
    Wang, Yuping
    Zhou, Yongning
    DISCOVER ONCOLOGY, 2021, 12 (01)
  • [22] Identification of prognostic biomarkers associated with tumor microenvironment in ceRNA network for esophageal squamous cell carcinoma: a bioinformatics study based on TCGA database
    Danlei Song
    Yongjian Wei
    Yuping Hu
    Xia Chen
    Ya Zheng
    Min Liu
    Yuping Wang
    Yongning Zhou
    Discover Oncology, 12
  • [23] Prognostic Role of ceRNA Network in Immune Infiltration of Hepatocellular Carcinoma
    Xu, Qianhui
    Chen, Shaohuai
    Hu, Yuanbo
    Huang, Wen
    FRONTIERS IN GENETICS, 2021, 12
  • [24] Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers in Renal Cell Carcinoma
    Lee, Seokwoo
    Lee, Wook
    Ren, Shulei
    Park, Byungkyu
    Han, Kyungsook
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 20 (05) : 2671 - 2680
  • [25] Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network
    Zhang, Qian
    Wang, Chenglin
    Li, Shilin
    Li, Yang
    Chen, Muhu
    Hu, Yingchun
    BMC MEDICAL GENOMICS, 2023, 16 (01)
  • [26] Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network
    Qian Zhang
    Chenglin Wang
    Shilin Li
    Yang Li
    Muhu Chen
    Yingchun Hu
    BMC Medical Genomics, 16
  • [27] Identification of a Functional ceRNA Network to Explore Potential Biomarkers for Hepatocellular Carcinoma
    Jiang, Zhijun
    Zhang, Yu
    Liu, Xinyu
    Liang, Jingchen
    Qiu, Guanhua
    Zhu, Xiaoqi
    Chen, Jie
    Li, Lequn
    ONCOTARGETS AND THERAPY, 2020, 13 : 12341 - 12355
  • [28] Construction of ceRNA network based on RNA-seq for identifying prognostic lncRNA biomarkers in Perthes disease
    Zhang, Tianjiu
    Hu, Xiaolin
    Yu, Song
    Wei, Chunyan
    FRONTIERS IN GENETICS, 2023, 14
  • [29] Bioinformatic screening for candidate biomarkers and their prognostic values in endometrial cancer
    Li, Yaowei
    Li, Li
    BMC GENETICS, 2020, 21 (01)
  • [30] Bioinformatic screening for candidate biomarkers and their prognostic values in endometrial cancer
    Yaowei Li
    Li Li
    BMC Genetics, 21