THE SELF-CLEAVAGE OF LARIAT-RNA

被引:24
|
作者
AGBACK, P [1 ]
GLEMAREC, C [1 ]
YIN, L [1 ]
SANDSTROM, A [1 ]
PLAVEC, J [1 ]
SUND, C [1 ]
YAMAKAGE, S [1 ]
VISWANADHAM, G [1 ]
ROUSSE, B [1 ]
PURI, N [1 ]
CHATTOPADHYAYA, J [1 ]
机构
[1] UNIV UPPSALA,CTR BIOMED,DEPT BIOORGAN CHEM,BOX 581,S-75123 UPPSALA,SWEDEN
关键词
D O I
10.1016/S0040-4039(00)79266-5
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
Lariat-RNAs 3 and 4 undergo site-specific self-cleavage reaction at the G3 --> C6/U7 phosphodiester bond by the nucleophilic attack of 2'-OH of G3 sugar moiety to its 3-phosphate to give 5'hydroxyl terminal at C6 or U7 and 2, 3-cyclic phosphodiester of G3 whereas lariat-tetramer 1, pentamer 2, the cyclic-A(2' --> 5)G-tetramer 5 and the cyclic-A(3' --> 5')G-tetramer 6 are completely stable. The lariat-RNAs 3 and 4 are the smallest RNA known to undergo self-cleavage which is reminiscent of the RNA-hammerhead (Ribozyme) activity. The geometry of the cleavage-site in 3 and 4 has been defined by full conformational analysis by NMR and molecular dynamics calculation in water.
引用
收藏
页码:3929 / 3932
页数:4
相关论文
共 50 条
  • [41] IS HAMMERHEAD SELF-CLEAVAGE INVOLVED IN THE REPLICATION OF A VIRUSOID INVIVO
    SHELDON, CC
    SYMONS, RH
    VIROLOGY, 1993, 194 (02) : 463 - 474
  • [42] Deciphering the Self-Cleavage Reaction Mechanism of Hairpin Ribozyme
    Kumar, Narendra
    Marx, Dominik
    JOURNAL OF PHYSICAL CHEMISTRY B, 2020, 124 (24): : 4906 - 4918
  • [43] A SATELLITE RNA OF BARLEY YELLOW DWARF VIRUS CONTAINS A NOVEL HAMMERHEAD STRUCTURE IN THE SELF-CLEAVAGE DOMAIN
    MILLER, WA
    HERCUS, T
    WATERHOUSE, PM
    GERLACH, WL
    VIROLOGY, 1991, 183 (02) : 711 - 720
  • [44] The poly(A) site sequence in HDV RNA alters both extent and rate of self-cleavage of the antigenomic ribozyme
    Brown, Abigail L.
    Perrotta, Anne T.
    Wadkins, Timothy S.
    Been, Michael D.
    NUCLEIC ACIDS RESEARCH, 2008, 36 (09) : 2990 - 3000
  • [45] Specific RNA self-cleavage in coconut cadang cadang viroid: Potential for a role in rolling circle replication
    Liu, YH
    Symons, RH
    RNA, 1998, 4 (04) : 418 - 429
  • [46] A SEQUENCE ELEMENT NECESSARY FOR SELF-CLEAVAGE OF THE ANTIGENOMIC HEPATITIS DELTA RNA IN 20-M FORMAMIDE
    SMITH, JB
    GOTTLIEB, PA
    DINTERGOTTLIEB, G
    BIOCHEMISTRY, 1992, 31 (40) : 9629 - 9635
  • [47] EVIDENCE FOR INTRAMOLECULAR SELF-CLEAVAGE OF PICORNAVIRAL REPLICASE PRECURSORS
    PALMENBERG, AC
    RUECKERT, RR
    JOURNAL OF VIROLOGY, 1982, 41 (01) : 244 - 249
  • [48] ALTERNATIVE TERTIARY STRUCTURE ATTENUATES SELF-CLEAVAGE OF THE RIBOZYME IN THE SATELLITE RNA OF BARLEY YELLOW DWARF VIRUS
    MILLER, WA
    SILVER, SL
    NUCLEIC ACIDS RESEARCH, 1991, 19 (19) : 5313 - 5320
  • [49] A PSEUDOKNOT-LIKE STRUCTURE REQUIRED FOR EFFICIENT SELF-CLEAVAGE OF HEPATITIS DELTA-VIRUS RNA
    PERROTTA, AT
    BEEN, MD
    NATURE, 1991, 350 (6317) : 434 - 436
  • [50] Pressure modulates the self-cleavage step of the hairpin ribozyme
    Caroline Schuabb
    Narendra Kumar
    Salome Pataraia
    Dominik Marx
    Roland Winter
    Nature Communications, 8