THE SELF-CLEAVAGE OF LARIAT-RNA

被引:24
|
作者
AGBACK, P [1 ]
GLEMAREC, C [1 ]
YIN, L [1 ]
SANDSTROM, A [1 ]
PLAVEC, J [1 ]
SUND, C [1 ]
YAMAKAGE, S [1 ]
VISWANADHAM, G [1 ]
ROUSSE, B [1 ]
PURI, N [1 ]
CHATTOPADHYAYA, J [1 ]
机构
[1] UNIV UPPSALA,CTR BIOMED,DEPT BIOORGAN CHEM,BOX 581,S-75123 UPPSALA,SWEDEN
关键词
D O I
10.1016/S0040-4039(00)79266-5
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
Lariat-RNAs 3 and 4 undergo site-specific self-cleavage reaction at the G3 --> C6/U7 phosphodiester bond by the nucleophilic attack of 2'-OH of G3 sugar moiety to its 3-phosphate to give 5'hydroxyl terminal at C6 or U7 and 2, 3-cyclic phosphodiester of G3 whereas lariat-tetramer 1, pentamer 2, the cyclic-A(2' --> 5)G-tetramer 5 and the cyclic-A(3' --> 5')G-tetramer 6 are completely stable. The lariat-RNAs 3 and 4 are the smallest RNA known to undergo self-cleavage which is reminiscent of the RNA-hammerhead (Ribozyme) activity. The geometry of the cleavage-site in 3 and 4 has been defined by full conformational analysis by NMR and molecular dynamics calculation in water.
引用
收藏
页码:3929 / 3932
页数:4
相关论文
共 50 条
  • [31] The structural basis of hammerhead ribozyme self-cleavage
    Murray, JB
    Terwey, DP
    Maloney, L
    Karpeisky, A
    Usman, N
    Beigelman, L
    Scott, WG
    CELL, 1998, 92 (05) : 665 - 673
  • [32] CHARACTERIZATION OF SELF-CLEAVAGE OF VIROID AND VIRUSOID RNAS
    FORSTER, AC
    DAVIES, C
    HUTCHINS, CJ
    SYMONS, RH
    METHODS IN ENZYMOLOGY, 1990, 181 : 583 - 607
  • [33] Ligand requirements for glmS ribozyme self-cleavage
    McCarthy, TJ
    Plog, MA
    Floy, SA
    Jansen, JA
    Soukup, JK
    Soukup, GA
    CHEMISTRY & BIOLOGY, 2005, 12 (11): : 1221 - 1226
  • [34] Molecular mechanism of the site-specific self-cleavage of the RNA phosphodiester backbone by a twister ribozyme
    Katarzyna Świderek
    Sergio Marti
    Iñaki Tuñón
    Vicent Moliner
    Juan Bertran
    Theoretical Chemistry Accounts, 2017, 136
  • [35] Liposome membrane can induce self-cleavage of RNA that models the core fragments of hammerhead ribozyme
    Keishi Suga
    Seishiro Tanaka
    Hiroshi Umakoshi
    European Biophysics Journal, 2016, 45 : 55 - 62
  • [36] Molecular mechanism of the site-specific self-cleavage of the RNA phosphodiester backbone by a twister ribozyme
    Swiderek, Katarzyna
    Marti, Sergio
    Tunon, Inaki
    Moliner, Vicent
    Bertran, Juan
    THEORETICAL CHEMISTRY ACCOUNTS, 2017, 136 (03)
  • [37] Liposome membrane can induce self-cleavage of RNA that models the core fragments of hammerhead ribozyme
    Suga, Keishi
    Tanaka, Seishiro
    Umakoshi, Hiroshi
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2016, 45 (01): : 55 - 62
  • [38] SELF-CLEAVAGE OF VIRUSOID RNA IS PERFORMED BY THE PROPOSED 55-NUCLEOTIDE ACTIVE-SITE
    FORSTER, AC
    SYMONS, RH
    CELL, 1987, 50 (01) : 9 - 16
  • [39] EVIDENCE THAT ALTERNATE FOLDINGS OF THE HEPATITIS-DELTA RNA CONFER VARYING RATES OF SELF-CLEAVAGE
    GOTTLIEB, PA
    PRASAD, Y
    SMITH, JB
    WILLIAMS, AP
    DINTERGOTTLIEB, G
    BIOCHEMISTRY, 1994, 33 (10) : 2802 - 2808
  • [40] Pressure modulates the self-cleavage step of the hairpin ribozyme
    Schuabb, Caroline
    Kumar, Narendra
    Pataraia, Salome
    Marx, Dominik
    Winter, Roland
    NATURE COMMUNICATIONS, 2017, 8