Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq

被引：0

作者：

Yiliang Ding

Chun Kit Kwok

Yin Tang

Philip C Bevilacqua

Sarah M Assmann

机构：

[1] Pennsylvania State University,Department of Biology

[2] University Park,Department of Chemistry

[3] Pennsylvania State University,undefined

[4] University Park,undefined

[5] Center for RNA Molecular Biology,undefined

[6] Pennsylvania State University,undefined

[7] University Park,undefined

[8] Bioinformatics and Genomics Graduate Program,undefined

[9] Pennsylvania State University,undefined

[10] University Park,undefined

[11] Plant Biology Graduate Program,undefined

[12] Pennsylvania State University,undefined

[13] University Park,undefined

[14] Present address: Department of Cell and Developmental Biology,undefined

[15] John Innes Centre,undefined

[16] Norwich Research Park,undefined

[17] Norwich,undefined

[18] UK.,undefined

[19] Present address: Department of Chemistry,undefined

[20] University of Cambridge,undefined

[21] Lensfield Road,undefined

[22] Cambridge,undefined

[23] UK.,undefined

来源：

Nature Protocols | 2015年 / 10卷

关键词：

D O I：

暂无

中图分类号：

学科分类号：

摘要：

Structure-seq applies chemically based RNA structure probing on a genome-wide scale, allowing the in vivo structures of thousands of distinct transcripts to be discerned, and the meta-properties of RNA structure–function relationships to be unveiled.

引用

页码：1050 / 1066

页数：16

共 50 条

[31] Genome-wide analysis of single-nucleotide polymorphisms in human expressed sequences
Kris Irizarry
Vlad Kustanovich
Cheng Li
Nik Brown
Stanley Nelson
Wing Wong
Christopher J. Lee
Nature Genetics, 2000, 26 : 233 - 236
[32] Genome-wide analysis of single-nucleotide polymorphisms in human expressed sequences
Irizarry, K
Kustanovich, V
Li, C
Brown, N
Nelson, S
Wong, W
Lee, CJ
NATURE GENETICS, 2000, 26 (02) : 233 - 236
[33] Genome-Wide Approaches for RNA Structure Probing
Silverman, Ian M.
Berkowitz, Nathan D.
Gosai, Sager J.
Gregory, Brian D.
RNA PROCESSING: DISEASE AND GENOME-WIDE PROBING, 2016, 907 : 29 - 59
[34] Genome-Wide Analysis of RNA Secondary Structure
Bevilacqua, Philip C.
Ritchey, Laura E.
Su, Zhao
Assmann, Sarah M.
ANNUAL REVIEW OF GENETICS, VOL 50, 2016, 50 : 235 - 266
[35] Epitranscriptomic mapping of RNA modifications at single-nucleotide resolution using rhodamine sequencing (Rho-seq)
Finet, Olivier
Yague-Sanz, Carlo
Hermand, Damien
STAR PROTOCOLS, 2022, 3 (02):
[36] Distinctive types of postzygotic single-nucleotide mosaicisms in healthy individuals revealed by genome-wide profiling of multiple organs
Huang, August Yue
Yang, Xiaoxu
Wang, Sheng
Zheng, Xianing
Wu, Qixi
Ye, Adam Yongxin
Wei, Liping
PLOS GENETICS, 2018, 14 (05):
[37] DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo
Zubradt M.
Gupta P.
Persad S.
Lambowitz A.M.
Weissman J.S.
Rouskin S.
Nature Methods, 2017, 14 (1) : 75 - 82
[38] DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo
Zubradt, Meghan
Gupta, Paromita
Persad, Sitara
Lambowitz, Alan M.
Weissman, Jonathan S.
Rouskin, Silvi
NATURE METHODS, 2017, 14 (01) : 75 - 82
[39] Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse
Wiltshire, T
Pletcher, MT
Batalov, S
Barnes, SW
Tarantino, LM
Cooke, MP
Wu, H
Smylie, K
Santrosyan, A
Copeland, NG
Jenkins, NA
Kalush, F
Mural, RJ
Glynne, RJ
Kay, SA
Adams, MD
Fletcher, CF
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (06) : 3380 - 3385
[40] Genome-Wide Study of Single-Nucleotide Polymorphisms Associated With Azoospermia and Severe Oligozoospermia
Aston, Kenneth I.
Carrell, Douglas T.
JOURNAL OF ANDROLOGY, 2009, 30 (06): : 711 - 725

← 1 2 3 4 5 →