Integration analysis of ATAC-seq and RNA-seq provides insight into fatty acid biosynthesis in Schizochytrium limacinum under nitrogen limitation stress

被引：0
|
作者：
Duo Chen
Jing Chen
Rongchun Dai
Xuehai Zheng
Yuying Han
Youqiang Chen
Ting Xue
机构：
[1] Fujian Normal University,The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement
来源：
BMC Genomics | / 25卷
关键词：
Fatty acids; DHA; Chromatin accessibility; Gene expressions;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] Bioinformatics Analysis Using ATAC-seq and RNA-seq for the Identification of 15 Gene Signatures Associated With the Prediction of Prognosis in Hepatocellular Carcinoma
    Yang, Hui
    Li, Gang
    Qiu, Guangping
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [42] Integrative Single-Cell RNA-Seq and Single-Cell ATAC-Seq Analysis of Human Plasma Cell Differentiation
    Alaterre, Elina
    Ovejero, Sara
    Espeli, Marion
    Fest, Thierry
    Cogne, Michel
    Milpied, Pierre
    Cavalli, Giacomo
    Moreaux, Jerome
    BLOOD, 2023, 142
  • [43] Combined ATAC-seq, RNA-seq, and GWAS analysis reveals glycogen metabolism regulatory network in Jinjiang oyster (Crassostrea ariakensis)
    Wu, Biao
    Chen, Xi
    Hu, Jie
    Wang, Zhen-Yuan
    Wang, Yan
    Xu, Da-You
    Guo, Hao-Bing
    Shao, Chang-Wei
    Zhou, Li-Qing
    Sun, Xiu-Jun
    Yu, Tao
    Wang, Xiao-Mei
    Zheng, Yan-Xin
    Fan, Guang-Yi
    Liu, Zhi-Hong
    ZOOLOGICAL RESEARCH, 2024, 45 (01) : 201 - 214
  • [44] Integrative Analysis of Single-Cell RNA-Seq and ATAC-Seq Data across Treatment Time Points in Pediatric AML
    Wei, Lisa
    Trinh, Diane
    Ries, Rhonda E.
    Jin, Dan
    Corbett, Richard D.
    Smith, Jenny L.
    Furlan, Scott N.
    Meshinchi, Soheil
    Marra, Marco A.
    BLOOD, 2020, 136
  • [45] Integrative RNA-seq and ATAC-seq analysis unveils antioxidant defense mechanisms in salt-tolerant rice variety Pokkali
    Yang, Qiaoyu
    Zheng, Yutong
    Li, Xitao
    BMC PLANT BIOLOGY, 2025, 25 (01):
  • [46] Novel ZNF414 activity characterized by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data
    Rodriguez-Martinez, Alejandra
    Vuorinen, Elisa M.
    Shcherban, Anastasia
    Uusi-Makela, Joonas
    Rajala, Nina K. M.
    Nykter, Matti
    Kallioniemi, Anne
    BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2022, 1865 (03):
  • [47] Integrated ATAC-seq and RNA-seq Analysis of In Vitro Cultured Skeletal Muscle Satellite Cells to Understand Changes in Cell Proliferation
    Ren, Zeyu
    Zhang, Siyi
    Shi, Liangyu
    Zhou, Ao
    Lin, Xin
    Zhang, Jing
    Zhu, Xiusheng
    Huang, Lei
    Li, Kui
    CELLS, 2024, 13 (12)
  • [48] Integrative Single-Cell RNA-Seq, Single Cell ATAC-Seq, and Spatial RNA-Seq Analysis of Heterogeneity in HPV-Related Head and Neck Squamous Cell Carcinoma
    Dalai, P.
    Gensterblum-Miller, E.
    Gu, W.
    Bhangale, A.
    Brummel, C.
    Mills, R.
    Brenner, C.
    INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS, 2024, 118 (05): : E73 - E74
  • [49] Integrative analysis of ATAC-seq and RNA-seq for cells infected by human T-cell leukemia virus type 1
    Tanaka, Azusa
    Ishitsuka, Yasuhiro
    Ohta, Hiroki
    Takenouchi, Norihiro
    Nakagawa, Masanori
    Koh, Ki-Ryang
    Onishi, Chiho
    Tanaka, Hiromitsu
    Fujimoto, Akihiro
    Yasunaga, Jun-ichirou
    Matsuoka, Masao
    PLOS COMPUTATIONAL BIOLOGY, 2025, 21 (01)
  • [50] RNA-seq analysis provides insight into molecular adaptations of Andrias davidianus
    Xiaofang Geng
    Lu Zhang
    Xiayan Zang
    Jianlin Guo
    Cunshuan Xu
    Development Genes and Evolution, 2019, 229 : 197 - 206
12345