Integration analysis of ATAC-seq and RNA-seq provides insight into fatty acid biosynthesis in Schizochytrium limacinum under nitrogen limitation stress

被引：0
|
作者：
Duo Chen
Jing Chen
Rongchun Dai
Xuehai Zheng
Yuying Han
Youqiang Chen
Ting Xue
机构：
[1] Fujian Normal University,The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement
来源：
BMC Genomics | / 25卷
关键词：
Fatty acids; DHA; Chromatin accessibility; Gene expressions;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] ATAC-seq and RNA-seq analysis unravel the mechanism of sex differentiation and infertility in sex reversal chicken
    Zhang, Xiuan
    Li, Jianbo
    Wang, Xiqiong
    Jie, Yuchen
    Sun, Congjiao
    Zheng, Jiangxia
    Li, Junying
    Yang, Ning
    Chen, Sirui
    EPIGENETICS & CHROMATIN, 2023, 16 (01)
  • [22] ATAC-seq and RNA-seq analysis unravel the mechanism of sex differentiation and infertility in sex reversal chicken
    Xiuan Zhang
    Jianbo Li
    Xiqiong Wang
    Yuchen Jie
    Congjiao Sun
    Jiangxia Zheng
    Junying Li
    Ning Yang
    Sirui Chen
    Epigenetics & Chromatin, 16
  • [23] Integration of ATAC-Seq and RNA-Seq Analysis to Identify Key Genes in the Longissimus Dorsi Muscle Development of the Tianzhu White Yak
    Li, Jingsheng
    Chen, Zongchang
    Bai, Yanbin
    Wei, Yali
    Guo, Dashan
    Liu, Zhanxin
    Niu, Yanmei
    Shi, Bingang
    Zhang, Xiaolan
    Cai, Yuan
    Zhao, Zhidong
    Hu, Jiang
    Wang, Jiqing
    Liu, Xiu
    Li, Shaobin
    Zhao, Fangfang
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (01)
  • [24] Integrative ATAC-seq and RNA-seq analysis of myogenic differentiation of ovine skeletal muscle satellite cell
    Su, Yingxiao
    He, Siqi
    Chen, Qian
    Zhang, Hechun
    Huang, Chang
    Zhao, Qian
    Pu, Yabin
    He, Xiaohong
    Jiang, Lin
    Ma, Yuehui
    Zhao, Qianjun
    GENOMICS, 2024, 116 (03)
  • [25] Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Mouse Corneal Epithelial Cells
    Lu, Zhao-Jing
    Ye, Jin-Guo
    Wang, Dong-Liang
    Li, Meng-Ke
    Zhang, Qi-Kai
    Liu, Zhong
    Huang, Yan-Jing
    Pan, Cai-Neng
    Lin, Yu-Heng
    Shi, Zhuo-Xing
    Zheng, Ying-Feng
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2023, 64 (03)
  • [26] Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress
    Qiu, Fuxiang
    Zheng, Yingjie
    Lin, Yao
    Woldegiorgis, Samuel Tareke
    Xu, Shichang
    Feng, Changqing
    Huang, Guanpeng
    Shen, Huiling
    Xu, Yinying
    Kabore, Manegdebwaoga Arthur Fabrice
    Ai, Yufang
    Liu, Wei
    He, Huaqin
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (06)
  • [27] Integration of ATAC-Seq and RNA-Seq Identifies Key Genes in Light-Induced Primordia Formation of Sparassis latifolia
    Yang, Chi
    Ma, Lu
    Xiao, Donglai
    Ying, Zhenghe
    Jiang, Xiaoling
    Lin, Yanquan
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (01)
  • [28] Integrative ATAC-seq and RNA-seq analysis associated with diabetic nephropathy and identification of novel targets for treatment by dapagliflozin
    Shen, Jianxiao
    Ying, Liang
    Wu, Jiajia
    Fang, Yan
    Zhou, Wenyan
    Qi, Chaojun
    Gu, Leyi
    Mou, Shan
    Yan, Yuru
    Tian, Ming
    Ni, Zhaohui
    Che, Xiajing
    CELL BIOCHEMISTRY AND FUNCTION, 2024, 42 (02)
  • [29] Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement
    Jia, Guangshuai
    Preussner, Jens
    Chen, Xi
    Guenther, Stefan
    Yuan, Xuejun
    Yekelchyk, Michail
    Kuenne, Carsten
    Looso, Mario
    Zhou, Yonggang
    Teichmann, Sarah
    Braun, Thomas
    NATURE COMMUNICATIONS, 2018, 9
  • [30] INTEGRATED ANALYSIS OF INTRA-TUMORAL HETEROGENEITY IN GLIOBLASTOMAS THROUGH SINGLE NUCLEI ATAC-SEQ AND RNA-SEQ
    Raviram, Ramya
    Raman, Anugraha
    Preissl, Sebastian
    Ning, Jianfang
    Wu, Shaoping
    Deynze, Kinsey
    Chen, Clark
    Ren, Bing
    NEURO-ONCOLOGY, 2020, 22 : 73 - 73
12345