The optimal standard protocols for whole-genome sequencing of antibiotic-resistant pathogenic bacteria using third-generation sequencing platforms

被引:0
|
作者
Tae-Min La
Ji-hoon Kim
Taesoo Kim
Hong-Jae Lee
Yoonsuk Lee
Hyunjin Shin
Yongjun Song
Gyuhee Ahn
Won Hur
Joong-Bok Lee
Seung-Yong Park
In-Soo Choi
Sang-Won Lee
机构
[1] Konkuk University,College of Veterinary Medicine
来源
关键词
Third-generation sequencing; DNA extraction; MinION; PacBio; Bacteria; Assembly;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
页码:493 / 501
页数:8
相关论文
共 50 条
  • [41] Using whole-genome sequencing to elucidate the epidemiology of the globally emerging, multidrug-resistant yeast Candida auris
    Chow, N. A.
    Gade, L.
    Lockhart, S.
    Vallabhaneni, S.
    Caceres, D. H.
    Armstrong, P.
    Tsay, S.
    Chaturvedi, S.
    Kerins, J.
    Escandon, P.
    Calvo, B.
    Ben-Ami, R.
    Santiago, E.
    Arauz, A. B.
    Borace, J.
    Rhodes, J. L.
    Fisher, M.
    Chiller, T. M.
    Litvintseva, A.
    MYCOSES, 2017, 60 : 21 - 21
  • [42] Genetic characterization of tetracycline-resistant Staphylococcus aureus with reduced vancomycin susceptibility using whole-genome sequencing
    Kim, Yu-Hee
    Park, Junghun
    Chung, Hae-Sun
    ARCHIVES OF MICROBIOLOGY, 2024, 206 (01)
  • [43] Ceftriaxone-Resistant Neisseria gonorrhoeae Isolates (2010 to 2014) in France Characterized by Using Whole-Genome Sequencing
    de Curraize, Claire
    Kumanski, Sylvain
    Micaelo, Maite
    Fournet, Nelly
    La Ruche, Guy
    Meunier, Fabienne
    Amarsy, Rishma
    Jacquier, Herve
    Cambau, Emmanuelle
    Goubard, Agathe
    Bercot, Beatrice
    ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2016, 60 (11) : 6962 - 6964
  • [44] Whole-Genome Sequencing Snapshot of Clinically Relevant Carbapenem-Resistant Gram-Negative Bacteria from Wastewater in Serbia
    Cirkovic, Ivana
    Muller, Bruno H.
    Janjusevic, Ana
    Mollon, Patrick
    Istier, Valerie
    Mirande-Meunier, Caroline
    Brkic, Snezana
    ANTIBIOTICS-BASEL, 2023, 12 (02):
  • [45] Genetic characterization of tetracycline-resistant Staphylococcus aureus with reduced vancomycin susceptibility using whole-genome sequencing
    Yu-Hee Kim
    Junghun Park
    Hae-Sun Chung
    Archives of Microbiology, 2024, 206
  • [46] Characterization of Fluoroquinolone-Resistant and Multidrug-Resistant Mycobacterium tuberculosis Isolates Using Whole-Genome Sequencing in Tianjin, China
    Wang, Zhirui
    Sun, Rui
    Mu, Cheng
    Wang, Chunhua
    Zhao, Hui
    Jiang, Lina
    Ju, Hanfang
    Dai, Wenxi
    Zhang, Fan
    INFECTION AND DRUG RESISTANCE, 2022, 15 : 1793 - 1803
  • [47] Analysis of the Taxonomy and Pathogenic Factors of Pectobacterium aroidearum L6 Using Whole-Genome Sequencing and Comparative Genomics
    Xu, Peidong
    Wang, Huanwei
    Qin, Chunxiu
    Li, Zengping
    Lin, Chunhua
    Liu, Wenbo
    Miao, Weiguo
    FRONTIERS IN MICROBIOLOGY, 2021, 12
  • [48] Evaluation of Whole-Genome Amplification for Next-Generation Sequencing Using the Illumina TruSeq Amplicon Cancer Panel
    Allen, S. F.
    Peterson, J. D.
    Wells, W. A.
    Tsongalis, G. J.
    de Abreu, F. B.
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2014, 16 (06): : 788 - 788
  • [49] Antibiotic Susceptibility Profiling of Human Pathogenic Staphylococcus aureus Strains Using Whole Genome Sequencing and Genome-Scale Annotation Approaches
    Snoussi, Mejdi
    Noumi, Emira
    Bouali, Nouha
    Bazaid, Abdulrahman S. S.
    Alreshidi, Mousa M. M.
    Altayb, Hisham N. N.
    Chaieb, Kamel
    MICROORGANISMS, 2023, 11 (05)
  • [50] Characterization of Third-Generation Cephalosporin-Resistant Escherichia coli Isolated from Pigs in Cuba Using Next-Generation Sequencing
    Hernandez-Fillor, Rosa Elena
    Brilhante, Michael
    Marrero-Moreno, Carelia Martha
    Baez, Michel
    Espinosa, Ivette
    Perreten, Vincent
    MICROBIAL DRUG RESISTANCE, 2021, 27 (07) : 1003 - 1010