The optimal standard protocols for whole-genome sequencing of antibiotic-resistant pathogenic bacteria using third-generation sequencing platforms

被引：0
|
作者：
Tae-Min La
Ji-hoon Kim
Taesoo Kim
Hong-Jae Lee
Yoonsuk Lee
Hyunjin Shin
Yongjun Song
Gyuhee Ahn
Won Hur
Joong-Bok Lee
Seung-Yong Park
In-Soo Choi
Sang-Won Lee
机构：
[1] Konkuk University,College of Veterinary Medicine
来源：
Molecular & Cellular Toxicology | 2021年 / 17卷
关键词：
Third-generation sequencing; DNA extraction; MinION; PacBio; Bacteria; Assembly;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
页码：493 / 501
页数：8
相关论文
共 50 条
  • [31] Comparing Platforms for C. elegans Mutant Identification Using High-Throughput Whole-Genome Sequencing
    Shen, Yufeng
    Sarin, Sumeet
    Liu, Ye
    Hobert, Oliver
    Pe'er, Itsik
    PLOS ONE, 2008, 3 (12):
  • [32] Whole-genome sequencing as standard practice for the analysis of clonality in outbreaks of meticillin-resistant Staphylococcus aureus in a paediatric setting
    Ugolotti, E.
    Larghero, P.
    Vanni, I.
    Bandettini, R.
    Tripodi, G.
    Melioli, G.
    Di Marco, E.
    Raso, A.
    Biassoni, R.
    JOURNAL OF HOSPITAL INFECTION, 2016, 93 (04) : 375 - 381
  • [33] Comparative Genomic Analysis of Pathogenic Factors of Pectobacterium Species Isolated in South Korea Using Whole-Genome Sequencing
    Jee, Samnyu
    Kang, In-Jeong
    Bak, Gyeryeong
    Kang, Sera
    Lee, Jeongtae
    Heu, Sunggi
    Hwang, Ingyu
    PLANT PATHOLOGY JOURNAL, 2022, 38 (01): : 12 - 24
  • [34] XCAVATOR: accurate detection and genotyping of copy number variants from second and third generation whole-genome sequencing experiments
    Magi, Alberto
    Pippucci, Tommaso
    Sidore, Carlo
    BMC GENOMICS, 2017, 18
  • [35] A case of genotype-3b hepatitis C virus in which the whole genome was successfully analyzed using third-generation nanopore sequencing
    Uchida, Yoshihito
    Kouyama, Jun-ichi
    Naiki, Kayoko
    Uemura, Hayato
    Tsuji, Shohei
    Sugawara, Kayoko
    Nakao, Masamitsu
    Motoya, Daisuke
    Nakayama, Nobuaki
    Imai, Yukinori
    Tomiya, Tomoaki
    Mochida, Satoshi
    HEPATOLOGY RESEARCH, 2019, 49 (09) : 1083 - 1087
  • [36] XCAVATOR: accurate detection and genotyping of copy number variants from second and third generation whole-genome sequencing experiments
    Alberto Magi
    Tommaso Pippucci
    Carlo Sidore
    BMC Genomics, 18
  • [37] Whole-genome sequencing of novel pathogenic and multidrug-resistant Kytococcus sedentarius, causing mortality in fish species (Labeo rohita)
    Das, Basanta Kumar
    Kumar, Vikash
    Roy, Suvra
    Mohanty, Debasmita
    Jana, Asim Kumar
    Gadnayak, Ayushman
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2025, 14 (01)
  • [38] Identification of antibiotic resistance genes in the multidrug-resistant Acinetobacter baumannii strain, MDR-SHH02, using whole-genome sequencing
    Wang, Hualiang
    Wang, Jinghua
    Yu, Peijuan
    Ge, Ping
    Jiang, Yanqun
    Xu, Rong
    Chen, Rong
    Liu, Xuejie
    INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 2017, 39 (02) : 364 - 372
  • [39] Evaluation of the genetic basis of primary hypoadrenocorticism in Standard Poodles using SNP array genotyping and whole-genome sequencing
    Steven G. Friedenberg
    Katharine F. Lunn
    Kathryn M. Meurs
    Mammalian Genome, 2017, 28 : 56 - 65
  • [40] Evaluation of the genetic basis of primary hypoadrenocorticism in Standard Poodles using SNP array genotyping and whole-genome sequencing
    Friedenberg, Steven G.
    Lunn, Katharine F.
    Meurs, Kathryn M.
    MAMMALIAN GENOME, 2017, 28 (1-2) : 56 - 65
12345