Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

被引：0
|
作者：
Sarah Goldstein
Lidia Beka
Joerg Graf
Jonathan L. Klassen
机构：
[1] University of Connecticut,Department of Molecular and Cell Biology
来源：
BMC Genomics | / 20卷
关键词：
Oxford Nanopore MinION; Genome sequencing; Genome assembly; Secondary metabolites; Insertion sequences;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] Targeted resequencing using the MinION long read sequencing platform
    McBride, Martin W.
    Ellis, Harriet
    Fisher, Simon
    Asirvatham, Amrita
    Jones, Marc
    FASEB JOURNAL, 2019, 33
  • [32] Improving Bacterial Metagenomic Research through Long-Read Sequencing
    Greenman, Noah
    Hassouneh, Sayf Al-Deen
    Abdelli, Latifa S.
    Johnston, Catherine
    Azarian, Taj
    MICROORGANISMS, 2024, 12 (05)
  • [33] Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes
    Zhang, Fan
    Xue, Hongzhang
    Dong, Xiaorui
    Li, Min
    Zheng, Xiaoming
    Li, Zhikang
    Xu, Jianlong
    Wang, Wensheng
    Wei, Chaochun
    GENOME RESEARCH, 2022, 32 (05) : 853 - 863
  • [34] Multiplexed Assembly and Annotation of Synthetic Biology Constructs Using Long-Read Nanopore Sequencing
    Emiliani, Francesco E.
    Hsu, Ian
    McKenna, Aaron
    ACS SYNTHETIC BIOLOGY, 2022, 11 (07): : 2238 - 2246
  • [35] Long-read sequence assembly: a technical evaluation in barley
    Mascher, Martin
    Wicker, Thomas
    Jenkins, Jerry
    Plott, Christopher
    Lux, Thomas
    Koh, Chu Shin
    Ens, Jennifer
    Gundlach, Heidrun
    Boston, Lori B.
    Tulpova, Zuzana
    Holden, Samuel
    Hernandez-Pinzon, Inmaculada
    Scholz, Uwe
    Mayer, Klaus F. X.
    Spannagl, Manuel
    Pozniak, Curtis J.
    Sharpe, Andrew G.
    Simkova, Hana
    Moscou, Matthew J.
    Grimwood, Jane
    Schmutz, Jeremy
    Stein, Nils
    PLANT CELL, 2021, 33 (06): : 1888 - 1906
  • [36] Long road to long-read assembly
    Marx, Vivien
    NATURE METHODS, 2021, 18 (02) : 125 - 129
  • [37] Highly accurate long-read HiFi sequencing data for five complex genomes
    Ting Hon
    Kristin Mars
    Greg Young
    Yu-Chih Tsai
    Joseph W. Karalius
    Jane M. Landolin
    Nicholas Maurer
    David Kudrna
    Michael A. Hardigan
    Cynthia C. Steiner
    Steven J. Knapp
    Doreen Ware
    Beth Shapiro
    Paul Peluso
    David R. Rank
    Scientific Data, 7
  • [38] Long road to long-read assembly
    Vivien Marx
    Nature Methods, 2021, 18 : 125 - 129
  • [39] Long-read sequencing for non-small-cell lung cancer genomes
    Sakamoto, Yoshitaka
    Xu, Liu
    Seki, Masahide
    Yokoyama, Toshiyuki T.
    Kasahara, Masahiro
    Kashima, Yukie
    Ohashi, Akihiro
    Shimada, Yoko
    Motoi, Noriko
    Tsuchihara, Katsuya
    Kobayashi, Susumu S.
    Kohno, Takashi
    Shiraishi, Yuichi
    Suzuki, Ayako
    Suzuki, Yutaka
    GENOME RESEARCH, 2020, 30 (09) : 1243 - 1257
  • [40] Highly accurate long-read HiFi sequencing data for five complex genomes
    Hon, Ting
    Mars, Kristin
    Young, Greg
    Tsai, Yu-Chih
    Karalius, Joseph W.
    Landolin, Jane M.
    Maurer, Nicholas
    Kudrna, David
    Hardigan, Michael A.
    Steiner, Cynthia C.
    Knapp, Steven J.
    Ware, Doreen
    Shapiro, Beth
    Peluso, Paul
    Rank, David R.
    SCIENTIFIC DATA, 2020, 7 (01)
12345