Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

被引：0
|
作者：
Sarah Goldstein
Lidia Beka
Joerg Graf
Jonathan L. Klassen
机构：
[1] University of Connecticut,Department of Molecular and Cell Biology
来源：
BMC Genomics | / 20卷
关键词：
Oxford Nanopore MinION; Genome sequencing; Genome assembly; Secondary metabolites; Insertion sequences;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] Complex genome assembly based on long-read sequencing
    Zhang, Tianjiao
    Zhou, Jie
    Gao, Wentao
    Jia, Yuran
    Wei, Yanan
    Wang, Guohua
    BRIEFINGS IN BIOINFORMATICS, 2022, 23 (05)
  • [22] High-throughput sequencing of Phytophthora ramorum Ex-type using long-read MinION nanopore sequencing
    Srivastava, S.
    Abad, Z. G.
    Knight, L. M.
    Rivera, Y.
    Zeller, K. A.
    Mavrodieva, V. A.
    Nakhla, M. K.
    PHYTOPATHOLOGY, 2019, 109 (10) : 186 - 186
  • [23] Re-examination of two diatom reference genomes using long-read sequencing
    Gina V. Filloramo
    Bruce A. Curtis
    Emma Blanche
    John M. Archibald
    BMC Genomics, 22
  • [24] Re-examination of two diatom reference genomes using long-read sequencing
    Filloramo, Gina V.
    Curtis, Bruce A.
    Blanche, Emma
    Archibald, John M.
    BMC GENOMICS, 2021, 22 (01)
  • [25] Long-read DNA methylation analysis of whole cancer genomes using a nanopore sequencing
    Nagae, Genta
    Aburatani, Hiroyuki
    CANCER SCIENCE, 2024, 115 : 399 - 399
  • [26] Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes
    Tvedte, Eric S.
    Gasser, Mark
    Sparklin, Benjamin C.
    Michalski, Jane
    Hjelmen, Carl E.
    Johnston, J. Spencer
    Zhao, Xuechu
    Bromley, Robin
    Tallon, Luke J.
    Sadzewicz, Lisa
    Rasko, David A.
    Hotopp, Julie C. Dunning
    G3-GENES GENOMES GENETICS, 2021, 11 (06):
  • [27] Profiling the epigenome using long-read sequencing
    Liu, Tianyuan
    Conesa, Ana
    NATURE GENETICS, 2025, 57 (01) : 27 - 41
  • [28] Comparison of long-read methods for sequencing and assembly of a plant genome
    Murigneux, Valentine
    Rai, Subash Kumar
    Furtado, Agnelo
    Bruxner, Timothy J. C.
    Tian, Wei
    Harliwong, Ivon
    Wei, Hanmin
    Yang, Bicheng
    Ye, Qianyu
    Anderson, Ellis
    Mao, Qing
    Drmanac, Radoje
    Wang, Ou
    Peters, Brock A.
    Xu, Mengyang
    Wu, Pei
    Topp, Bruce
    Coin, Lachlan J. M.
    Henry, Robert J.
    GIGASCIENCE, 2020, 9 (12):
  • [29] Long-read sequencing and de novo assembly of a Chinese genome
    Lingling Shi
    Yunfei Guo
    Chengliang Dong
    John Huddleston
    Hui Yang
    Xiaolu Han
    Aisi Fu
    Quan Li
    Na Li
    Siyi Gong
    Katherine E. Lintner
    Qiong Ding
    Zou Wang
    Jiang Hu
    Depeng Wang
    Feng Wang
    Lin Wang
    Gholson J. Lyon
    Yongtao Guan
    Yufeng Shen
    Oleg V. Evgrafov
    James A. Knowles
    Francoise Thibaud-Nissen
    Valerie Schneider
    Chack-Yung Yu
    Libing Zhou
    Evan E. Eichler
    Kwok-Fai So
    Kai Wang
    Nature Communications, 7
  • [30] Long-read sequencing and de novo assembly of a Chinese genome
    Shi, Lingling
    Guo, Yunfei
    Dong, Chengliang
    Huddleston, John
    Yang, Hui
    Han, Xiaolu
    Fu, Aisi
    Li, Quan
    Li, Na
    Gong, Siyi
    Lintner, Katherine E.
    Ding, Qiong
    Wang, Zou
    Hu, Jiang
    Wang, Depeng
    Wang, Feng
    Wang, Lin
    Lyon, Gholson J.
    Guan, Yongtao
    Shen, Yufeng
    Evgrafov, Oleg V.
    Knowles, James A.
    Thibaud-Nissen, Francoise
    Schneider, Valerie
    Yu, Chack-Yung
    Zhou, Libing
    Eichler, Evan E.
    So, Kwok-Fai
    Wang, Kai
    NATURE COMMUNICATIONS, 2016, 7
12345