Model selection and parameter estimation in tumor growth models using approximate Bayesian computation-ABC

被引:0
|
作者
José Mir Justino da Costa
Helcio Rangel Barreto Orlande
Wellington Betencurte da Silva
机构
[1] Federal University of Amazonas-UFAM,Department of Statistics
[2] Federal University of Rio de Janeiro,Department of Mechanical Engineering
[3] UFRJ Cidade Universitária,Laboratório de Modelagem e Otimização de Processos
[4] Federal University of Esprito Santo-UFES,undefined
来源
关键词
Model selection; Parameter estimation; Approximate Bayesian computation and tumor growth; 34F05; 35K57; 60G20; 62J02; 62M86; 92B05;
D O I
暂无
中图分类号
学科分类号
摘要
Cancer is one of the most fatal diseases in the world. Governments and researchers from various areas have continuously concentrated efforts to better understand the disease and propose diagnostic and treatment techniques. The use of mathematical models of tumor growth is of great importance for the development of such techniques. Due to the variety of models nowadays available in the literature, the problems of model selection and parameter estimation come into picture, aiming at suitably predicting the patient’s status of the disease. As the available data on dependent variables of existing models might not justify the use of common likelihood functions, approximate Bayesian computation (ABC) becomes a very attractive tool for model selection and model calibration (parameter estimation) in tumor growth models. In the present study, a Monte Carlo approximate Bayesian computation (ABC) algorithm is applied to select among competing models of tumor growth, with and without chemotherapy treatment. Simulated measurements are used in this work. The results obtained show that the algorithm correctly selects the model and estimates the parameters used to generate the simulated measurements.
引用
收藏
页码:2795 / 2815
页数:20
相关论文
共 50 条
  • [1] Model selection and parameter estimation in tumor growth models using approximate Bayesian computation-ABC
    Justino da Costa, Jose Mir
    Barreto Orlande, Helcio Rangel
    da Silva, Wellington Betencurte
    COMPUTATIONAL & APPLIED MATHEMATICS, 2018, 37 (03): : 2795 - 2815
  • [2] Model selection and parameter estimation in structural dynamics using approximate Bayesian computation
    Ben Abdessalem, Anis
    Dervilis, Nikolaos
    Wagg, David
    Worden, Keith
    MECHANICAL SYSTEMS AND SIGNAL PROCESSING, 2018, 99 : 306 - 325
  • [3] Model selection and parameter estimation of dynamical systems using a novel variant of approximate Bayesian computation
    Ben Abdessalem, A.
    Dervilis, N.
    Wagg, D.
    Worden, K.
    MECHANICAL SYSTEMS AND SIGNAL PROCESSING, 2019, 122 : 364 - 386
  • [4] A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation
    Juliane Liepe
    Paul Kirk
    Sarah Filippi
    Tina Toni
    Chris P Barnes
    Michael P H Stumpf
    Nature Protocols, 2014, 9 : 439 - 456
  • [5] A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation
    Liepe, Juliane
    Kirk, Paul
    Filippi, Sarah
    Toni, Tina
    Barnes, Chris P.
    Stumpf, Michael P. H.
    NATURE PROTOCOLS, 2014, 9 (02) : 439 - 456
  • [6] Model Selection and Parameter Estimation for an Improved Approximate Bayesian Computation Sequential Monte Carlo Algorithm
    Deng, Yue
    Pei, Yongzhen
    Li, Changguo
    Zhu, Bin
    DISCRETE DYNAMICS IN NATURE AND SOCIETY, 2022, 2022
  • [7] Calibrating models of cancer invasion: parameter estimation using approximate Bayesian computation and gradient matching
    Xiao, Yunchen
    Thomas, Len
    Chaplain, Mark A. J.
    ROYAL SOCIETY OPEN SCIENCE, 2021, 8 (06):
  • [8] Parameter estimation for an immortal model of colonic stem cell division using approximate Bayesian computation
    Walters, Kevin
    JOURNAL OF THEORETICAL BIOLOGY, 2012, 306 : 104 - 114
  • [9] Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
    Toni, Tina
    Welch, David
    Strelkowa, Natalja
    Ipsen, Andreas
    Stumpf, Michael P. H.
    JOURNAL OF THE ROYAL SOCIETY INTERFACE, 2009, 6 (31) : 187 - 202
  • [10] Model Selection in Historical Research Using Approximate Bayesian Computation
    Rubio-Campillo, Xavier
    PLOS ONE, 2016, 11 (01):