Wochenende — modular and flexible alignment-based shotgun metagenome analysis

被引：0
|
作者：
Ilona Rosenboom
Tobias Scheithauer
Fabian C. Friedrich
Sophia Pörtner
Lisa Hollstein
Marie-Madlen Pust
Konstantinos Sifakis
Tom Wehrbein
Bodo Rosenhahn
Lutz Wiehlmann
Patrick Chhatwal
Burkhard Tümmler
Colin F. Davenport
机构：
[1] Hannover Medical School,Clinical Research Group Molecular Pathology of Cystic Fibrosis and Pseudomonas Genomics, Clinic for Pediatric Pneumology, Allergology and Neonatology
[2] Hannover Medical School,Research Core Unit Genomics
[3] University of Crete,Department of Microbiology
[4] Institut Fuer Informationsverarbeitung (TNT),undefined
[5] Leibniz University Hannover,undefined
[6] Hannover Medical School,undefined
来源：
BMC Genomics | / 23卷
关键词：
Metagenomics; Genomics; Absolute quantification; Metagenomic visualization; Long-read metagenomics;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] Orientation Alignment-based Formation Control with Reference Node
    Ahn, Hyo-Sung
    Lee, Byung-Hun
    Oh, Kwang-Kyo
    Jeong, Kyungmin
    2015 34TH CHINESE CONTROL CONFERENCE (CCC), 2015, : 6942 - 6947
  • [42] Alignment-based codeword-dependent cepstral normalization
    Huerta, JM
    IEEE TRANSACTIONS ON SPEECH AND AUDIO PROCESSING, 2002, 10 (07): : 451 - 459
  • [43] Comparative analysis of alignment-free genome clustering and whole genome alignment-based phylogenomic relationship of coronaviruses
    Kirichenko, Anastasiya D.
    Poroshina, Anastasiya A.
    Sherbakov, Dmitry Yu
    Sadovsky, Michael G.
    Krutovsky, Konstantin, V
    PLOS ONE, 2022, 17 (03):
  • [44] Generalized Alignment-Based Trace Clustering of Process Behavior
    Boltenhagen, Mathilde
    Chatain, Thomas
    Carmona, Josep
    APPLICATION AND THEORY OF PETRI NETS AND CONCURRENCY, PETRI NETS 2019, 2019, 11522 : 237 - 257
  • [45] Improved Alignment-Based Algorithm for Multilingual Text Compression
    Conley, Ehud S.
    Klein, Shmuel T.
    MATHEMATICS IN COMPUTER SCIENCE, 2013, 7 (02) : 137 - 153
  • [46] A method to avoid errors associated with the analysis of hypermutated viral sequences by alignment-based methods
    Alinejad-Rokny, Hamid
    Ebrahimi, Diako
    JOURNAL OF BIOMEDICAL INFORMATICS, 2015, 58 : 220 - 225
  • [47] MTSv: rapid alignment-based taxonomic classification and high-confidence metagenomic analysis
    Furstenau, Tara N.
    Schneider, Tsosie
    Shaffer, Isaac
    Vazquez, Adam J.
    Sahl, Jason
    Fofanov, Viacheslav
    PEERJ, 2022, 10
  • [48] Flexible 3D Model Partitioning System for nD-Based BIM Implementation of Alignment-Based Civil Infrastructure
    Lee, Seung Soo
    Kim, Kyung Tae
    Tanoli, Waqas Arshad
    Seo, Jong Won
    JOURNAL OF MANAGEMENT IN ENGINEERING, 2020, 36 (01)
  • [49] AASRA: an anchor alignment-based small RNA annotation pipeline
    Tang, Chong
    Xie, Yeming
    Guo, Mei
    Yan, Wei
    BIOLOGY OF REPRODUCTION, 2021, 105 (01) : 267 - 277
  • [50] Fast and Safe Policy Adaptation via Alignment-based Transfer
    Kim, Jigang
    Choi, Seungwon
    Kim, H. Jin
    2019 IEEE/RSJ INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS (IROS), 2019, : 990 - 996
12345