Where To Begin? Mapping Transcription Start Sites Genome-Wide in Escherichia coli

被引:7
|
作者
Wade, Joseph T. [1 ,2 ]
机构
[1] New York State Dept Hlth, Wadsworth Ctr, Albany, NY 12205 USA
[2] SUNY Albany, Dept Biomed Sci, Albany, NY USA
关键词
ANTISENSE TRANSCRIPTION; RNA; BACTERIA;
D O I
10.1128/JB.02410-14
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Recent genome-wide studies of bacterial transcription have revealed large numbers of promoters located inside genes. In this issue of the Journal of Bacteriology, Thomason and colleagues (J. Bacteriol. 197:18-28, 2015, doi:10.1128/JB.02096-14) map transcription start sites in Escherichia coli on an unprecedented scale. This work provides important insights into the regulation of transcripts that initiate inside genes and sources of variability between studies aimed at identifying these RNAs.
引用
收藏
页码:4 / 6
页数:3
相关论文
共 50 条
  • [31] MAPPING E. COLI RNA POLYMERASE AND ASSOCIATED TRANSCRIPTION FACTORS AND IDENTIFYING PROMOTERS GENOME-WIDE
    Davis, Sarah E.
    Mooney, Rachel A.
    Kanin, Elenita I.
    Grass, Jeff
    Landick, Robert
    Ansari, Aseem Z.
    SYNTHETIC BIOLOGY, PT B: COMPUTER AIDED DESIGN AND DNA ASSEMBLY, 2011, 498 : 449 - 471
  • [32] Genome-Wide Mapping of Transcriptional Regulation and Metabolism Describes Information-Processing Units in Escherichia coli
    Ledezma-Tejeida, Daniela
    Ishida, Cecilia
    Collado-Vides, Julio
    FRONTIERS IN MICROBIOLOGY, 2017, 8
  • [33] Mapping protase susceptibility sites on the Escherichia coli transcription factor σ70
    McMahan, SA
    Burgess, RR
    BIOCHEMISTRY, 1999, 38 (38) : 12424 - 12431
  • [34] Genome-Wide Identification of Transcription Start Sites in Two Alphaproteobacteria, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444
    Myers, Kevin S.
    Vera, Jessica M.
    Lemmer, Kimberly C.
    Linz, Alexandra M.
    Landick, Robert
    Noguera, Daniel R.
    Donohue, Timothy J.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (36):
  • [35] No Promoter Left Behind (NPLB): learn de novo promoter architectures from genome-wide transcription start sites
    Mitra, Sneha
    Narlikar, Leelavati
    BIOINFORMATICS, 2016, 32 (05) : 779 - 781
  • [36] Genome-wide identification of transcript start and end sites by transcript isoform sequencing
    Vicent Pelechano
    Wu Wei
    Petra Jakob
    Lars M Steinmetz
    Nature Protocols, 2014, 9 : 1740 - 1759
  • [37] Genome-wide identification of transcript start and end sites by transcript isoform sequencing
    Pelechano, Vicent
    Wei, Wu
    Jakob, Petra
    Steinmetz, Lars M.
    NATURE PROTOCOLS, 2014, 9 (07) : 1740 - 1759
  • [38] Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
    Yamashita, Riu
    Sathira, Nuankanya P.
    Kanai, Akinori
    Tanimoto, Kousuke
    Arauchi, Takako
    Tanaka, Yoshiaki
    Hashimoto, Shin-ichi
    Sugano, Sumio
    Nakai, Kenta
    Suzuki, Yutaka
    GENOME RESEARCH, 2011, 21 (05) : 775 - 789
  • [39] Genome-wide partial correlation analysis of Escherichia coli microarray data
    Veiga, D. F. T.
    Vicente, F. F. R.
    Grivet, M.
    de la Fuente, A.
    Vasconcelos, A. T. R.
    GENETICS AND MOLECULAR RESEARCH, 2007, 6 (04) : 730 - 742
  • [40] Genome-Wide Screen for Escherichia coli [NiFe]-Hydrogenase Maturation Factors
    Lacasse, Michael Joseph
    Cote, Jean-Philippe
    Brown, Eric D.
    Zamble, Deborah Beth
    FASEB JOURNAL, 2017, 31