Where To Begin? Mapping Transcription Start Sites Genome-Wide in Escherichia coli

被引:7
|
作者
Wade, Joseph T. [1 ,2 ]
机构
[1] New York State Dept Hlth, Wadsworth Ctr, Albany, NY 12205 USA
[2] SUNY Albany, Dept Biomed Sci, Albany, NY USA
关键词
ANTISENSE TRANSCRIPTION; RNA; BACTERIA;
D O I
10.1128/JB.02410-14
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Recent genome-wide studies of bacterial transcription have revealed large numbers of promoters located inside genes. In this issue of the Journal of Bacteriology, Thomason and colleagues (J. Bacteriol. 197:18-28, 2015, doi:10.1128/JB.02096-14) map transcription start sites in Escherichia coli on an unprecedented scale. This work provides important insights into the regulation of transcripts that initiate inside genes and sources of variability between studies aimed at identifying these RNAs.
引用
收藏
页码:4 / 6
页数:3
相关论文
共 50 条
  • [21] Mapping genome-wide transcription-factor binding sites using DAP-seq
    Bartlett, Anna
    O'Malley, Ronan C.
    Huang, Shao-shan Carol
    Galli, Mary
    Nery, Joseph R.
    Gallavotti, Andrea
    Ecker, Joseph R.
    NATURE PROTOCOLS, 2017, 12 (08) : 1659 - 1672
  • [22] Genome-Wide Transcription Start Site Mapping and Promoter Assignments to a Sigma Factor in the Human EnteropathogenClostridioides difficile
    Soutourina, Olga
    Dubois, Thomas
    Monot, Marc
    Shelyakin, Pavel, V
    Saujet, Laure
    Boudry, Pierre
    Gelfand, Mikhail S.
    Dupuy, Bruno
    Martin-Verstraete, Isabelle
    FRONTIERS IN MICROBIOLOGY, 2020, 11
  • [23] Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum
    Albersmeier, Andreas
    Pfeifer-Sancar, Katharina
    Rueckert, Christian
    Kalinowski, Joern
    JOURNAL OF BIOTECHNOLOGY, 2017, 257 : 99 - 109
  • [24] Genome-wide Mutational Diversity in an Evolving Population of Escherichia coli
    Barrick, J. E.
    Lenski, R. E.
    EVOLUTION: THE MOLECULAR LANDSCAPE, 2009, 74 : 119 - 129
  • [25] Genome-wide transcription analysis of Escherichia coli in response to extremely low-frequency magnetic fields
    Huwiler, Simona G.
    Beyer, Christian
    Froehlich, Juerg
    Hennecke, Hauke
    Egli, Thomas
    Schuermann, David
    Rehrauer, Hubert
    Fischer, Hans-Martin
    BIOELECTROMAGNETICS, 2012, 33 (06) : 488 - 496
  • [26] The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli
    Esquerre, Thomas
    Bouvier, Marie
    Turlan, Catherine
    Carpousis, Agamemnon J.
    Girbal, Laurence
    Cocaign-Bousquet, Muriel
    SCIENTIFIC REPORTS, 2016, 6
  • [27] The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli
    Thomas Esquerré
    Marie Bouvier
    Catherine Turlan
    Agamemnon J. Carpousis
    Laurence Girbal
    Muriel Cocaign-Bousquet
    Scientific Reports, 6
  • [28] Genome-Wide Mapping of RNA Polymerase II Termination Sites
    Corden, Jeff
    Merran, Jonathan
    Schaughency, Paul
    FASEB JOURNAL, 2015, 29
  • [29] Genome-Wide Mapping of Yeast Retrotransposon Integration Target Sites
    Barkova, Anastasia
    Asif-Laidin, Amna
    Lesage, Pascale
    HIGH-DENSITY SEQUENCING APPLICATIONS IN MICROBIAL MOLECULAR GENETICS, 2018, 612 : 197 - 223
  • [30] Genome-wide transcription start site mapping in the facultative intracellular pathogen Brucella melitensis by Capping-seq
    Liu, Fang
    Huang, Yong-Fang
    Wu, Chang-Xian
    Duan, Long-Chuan
    Chen, Huan-Chun
    Liu, Zheng-Fei
    GENE, 2022, 844