Genome build information is an essential part of genomic track files

被引：3

作者：

Kanduri, Chakravarthi ^{[1
,2
]}

Domanska, Diana ^{[1
]}

Hovig, Eivind ^{[1
,3
,4
]}

Sandve, Geir Kjetil ^{[1
,2
]}

机构：

[1] Univ Oslo, Dept Informat, N-0316 Oslo, Norway

[2] Univ Oslo, KG Jebsen Coeliac Dis Res Ctr, N-0318 Oslo, Norway

[3] Oslo Univ Hosp, Inst Canc Res, Dept Tumor Biol, N-0424 Oslo, Norway

[4] Oslo Univ Hosp, Norwegian Radium Hosp, Inst Canc Genet & Informat, N-0424 Oslo, Norway

来源：

GENOME BIOLOGY | 2017年 / 18卷

关键词：

ARCHIVE;

D O I：

10.1186/s13059-017-1312-1

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Genomic locations are represented as coordinates on a specific genome build version, but the build information is frequently missing when coordinates are provided. We show that this information is essential to correctly interpret and analyse the genomic intervals contained in genomic track files. Although not a substitute for best practices, we also provide a tool to predict the genome build version of genomic track files.

引用

页数：5

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