Genome build information is an essential part of genomic track files

被引：3
|
作者：
Kanduri, Chakravarthi [1 ,2 ]
Domanska, Diana [1 ]
Hovig, Eivind [1 ,3 ,4 ]
Sandve, Geir Kjetil [1 ,2 ]
机构：
[1] Univ Oslo, Dept Informat, N-0316 Oslo, Norway
[2] Univ Oslo, KG Jebsen Coeliac Dis Res Ctr, N-0318 Oslo, Norway
[3] Oslo Univ Hosp, Inst Canc Res, Dept Tumor Biol, N-0424 Oslo, Norway
[4] Oslo Univ Hosp, Norwegian Radium Hosp, Inst Canc Genet & Informat, N-0424 Oslo, Norway
来源：
GENOME BIOLOGY | 2017年 / 18卷
关键词：
ARCHIVE;
D O I：
10.1186/s13059-017-1312-1
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
Genomic locations are represented as coordinates on a specific genome build version, but the build information is frequently missing when coordinates are provided. We show that this information is essential to correctly interpret and analyse the genomic intervals contained in genomic track files. Although not a substitute for best practices, we also provide a tool to predict the genome build version of genomic track files.
引用
收藏
页数：5
相关论文
共 50 条
  • [31] A loop-loop ''kissing'' complex is the essential part of the dimer linkage of genomic HIV-1 RNA
    Paillart, JC
    Skripkin, E
    Ehresmann, B
    Ehresmann, C
    Marquet, R
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (11) : 5572 - 5577
  • [32] Direct multiplexed whole genome sequencing of respiratory tract samples reveals full viral genomic information
    Zoll, Jan
    Rahamat-Langendoen, Janette
    Ahout, Inge
    de Jonge, Marien I.
    Jans, Jop
    Huijnen, Martijn A.
    Ferwerda, Gerben
    Warris, Adilia
    Melchers, Willem J. G.
    JOURNAL OF CLINICAL VIROLOGY, 2015, 66 : 6 - 11
  • [33] Intensification in Genetic Information and Acquisition of Resistant Genes in Genome of Acinetobacter baumannii: A Pan-Genomic Analysis
    Ali, Akhtar
    Khatoon, Ambrina
    Mirza, Talat
    Ahmad, Farah
    BIOMED RESEARCH INTERNATIONAL, 2022, 2022
  • [34] Experimental Investigation of the Essential Information in the Part of Remarks of Operation Manual to Support Novice Plant Operators
    Matsubara, Takashi
    Gofuku, Akio
    Sugihara, Taro
    IFAC PAPERSONLINE, 2016, 49 (19): : 462 - 467
  • [35] A multilingual soil profile database (SDBm Plus) as an essential part of land resources information systems
    de la Rosa, D
    Mayol, F
    Moreno, F
    Cabrera, F
    Díaz-Pereira, E
    Antoine, J
    ENVIRONMENTAL MODELLING & SOFTWARE, 2002, 17 (08) : 721 - 730
  • [36] GENOME-WIDE GENOMIC ABNORMALITIES AND FUNCTIONAL ESSENTIAL GENES IN BURKITT LYMPHOMA: A SYSTEMATIC REVIEWAND META-ANALYSIS
    Zhou, P.
    Zaka, M.
    Newman, A.
    Blain, A.
    Hajduga, N.
    Bomken, S.
    Bacon, C.
    Rand, V.
    LEUKEMIA RESEARCH, 2022, 121 : S21 - S22
  • [37] A Whole Genome Sequencing-Based Approach to Track down Genomic Variants in Itraconazole-Resistant Species of Aspergillus from Iran
    Nargesi, Sanaz
    Valadan, Reza
    Abastabar, Mahdi
    Kaboli, Saeed
    Thekkiniath, Jose
    Hedayati, Mohammad Taghi
    JOURNAL OF FUNGI, 2022, 8 (10)
  • [38] Sharing genetic variants with the NGS pipeline is essential for effective genomic data sharing and reproducibility in health information exchange
    Jeong Hoon Lee
    Solbi Kweon
    Yu Rang Park
    Scientific Reports, 11
  • [39] Sharing genetic variants with the NGS pipeline is essential for effective genomic data sharing and reproducibility in health information exchange
    Lee, Jeong Hoon
    Kweon, Solbi
    Park, Yu Rang
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [40] Track: Miniproteins: Are There Really That Many Additional Genes That We Have Been Missing? Is it a mistake in the genome sequencing or a spare part protein?
    Andorfer, Mary
    Backman, Lindsey
    PROTEIN SCIENCE, 2023, 32
12345