Matching 2D gel electrophoresis images

被引:14
|
作者
Kaczmarek, K
Walczak, B
de Jong, S
Vandeginste, BGM
机构
[1] Silesian Univ, Inst Chem, PL-40006 Katowice, Poland
[2] Unilever Res Labs Vlaardingen, NL-3133 AT Vlaardingen, Netherlands
关键词
D O I
10.1021/ci0256337
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Automatic alignment (matching) of two-dimensional gel electrophoresis images is of primary interest in the field of proteomics. The proposed method of 2D gel image matching is based on fuzzy alignment of features, extracted from gels' images, and it allows both global and local interpolation of image grid, followed by brightness interpolation. Method performance is tested on simulated images and gel images available via the Internet databases.
引用
收藏
页码:978 / 986
页数:9
相关论文
共 50 条
  • [41] A new progressive image transmission scheme based on content feature and Gaussian model of 2D gel electrophoresis images
    Tsai, TS
    Chen, TS
    Chen, J
    Tang, SS
    Chou, MC
    Li, SY
    Wang, TS
    8TH INTERNATIONAL CONFERENCE ON ADVANCED COMMUNICATION TECHNOLOGY, VOLS 1-3: TOWARD THE ERA OF UBIQUITOUS NETWORKS AND SOCIETIES, 2006, : U69 - U74
  • [42] Non-subsampled Contourlet Transform & Coherent Point Drift based Registration of 2D Gel Electrophoresis Images
    Sudhakara, Sagar
    Patel, Nikunj
    Gadre, V. M.
    2017 2ND INTERNATIONAL CONFERENCE FOR CONVERGENCE IN TECHNOLOGY (I2CT), 2017, : 410 - 415
  • [43] 2D Matching Using Repetitive and Salient Features in Architectural Images
    Morago, Brittany
    Bui, Giang
    Duan, Ye
    IEEE TRANSACTIONS ON IMAGE PROCESSING, 2016, 25 (10) : 4888 - 4899
  • [44] RETRIEVAL OF 2D VECTOR IMAGES BY MATCHING WEIGHTED FEATURE POINTS
    Hayashi, Takahiro
    Kiyono, Tatsuya
    Abe, Koji
    Onai, Rikio
    2008 15TH IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING, VOLS 1-5, 2008, : 961 - 964
  • [45] Optimization of large gel 2D electrophoresis for proteomic studies of skeletal muscle
    Reed, Patrick W.
    Densmore, Allison
    Bloch, Robert J.
    ELECTROPHORESIS, 2012, 33 (08) : 1263 - 1270
  • [46] An effective placental cotyledons proteins extraction method for 2D gel electrophoresis
    Tan, Niu J.
    Daim, Leona D. J.
    Jamil, Amilia A. M.
    Mohtarrudin, Norhafizah
    Thilakavathy, Karuppiah
    ELECTROPHORESIS, 2017, 38 (05) : 633 - 644
  • [47] A probabilistic treatment of the missing spot problem in 2D gel electrophoresis experimentse
    Krogh, Morten
    Fernandez, Celine
    Teilum, Maria
    Bengtsson, Sofia
    James, Peter
    JOURNAL OF PROTEOME RESEARCH, 2007, 6 (08) : 3335 - 3343
  • [48] Constructed 2D gel electrophoresis map of M. tuberculosis proteorne
    Li, Weimin
    Zhang, Suxia
    Li, Chuanyou
    Zhao, Qing
    Zha, Fangtao
    MOLECULAR & CELLULAR PROTEOMICS, 2004, 3 (10) : S155 - S155
  • [49] Improved consistency in 2D gel electrophoresis: Sheep plasma as a test case
    Brown, Stuart
    Norris, Gillian
    ELECTROPHORESIS, 2017, 38 (06) : 906 - 913
  • [50] Unsupervised 2D gel electrophoresis image segmentation based on active contours
    Savelonas, Michalis A.
    Mylona, Eleftheria A.
    Maroulis, Dimitris
    PATTERN RECOGNITION, 2012, 45 (02) : 720 - 731