Matching 2D gel electrophoresis images

被引:14
|
作者
Kaczmarek, K
Walczak, B
de Jong, S
Vandeginste, BGM
机构
[1] Silesian Univ, Inst Chem, PL-40006 Katowice, Poland
[2] Unilever Res Labs Vlaardingen, NL-3133 AT Vlaardingen, Netherlands
关键词
D O I
10.1021/ci0256337
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Automatic alignment (matching) of two-dimensional gel electrophoresis images is of primary interest in the field of proteomics. The proposed method of 2D gel image matching is based on fuzzy alignment of features, extracted from gels' images, and it allows both global and local interpolation of image grid, followed by brightness interpolation. Method performance is tested on simulated images and gel images available via the Internet databases.
引用
收藏
页码:978 / 986
页数:9
相关论文
共 50 条
  • [21] Information extraction from 2D electrophoresis images
    Thompson, A
    Brotherton, T
    PROCEEDINGS OF THE 20TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOL 20, PTS 1-6: BIOMEDICAL ENGINEERING TOWARDS THE YEAR 2000 AND BEYOND, 1998, 20 : 1060 - 1063
  • [22] 2D registration based on contour matching for partial matching images
    张见威
    黄达承
    桂姜琴
    叶文忠
    Journal of Central South University, 2014, 21 (12) : 4553 - 4562
  • [23] 2D registration based on contour matching for partial matching images
    Zhang Jian-wei
    Huang Da-cheng
    Gui Jiang-qin
    Ye Wen-zhong
    JOURNAL OF CENTRAL SOUTH UNIVERSITY, 2014, 21 (12) : 4553 - 4562
  • [24] 2D registration based on contour matching for partial matching images
    Jian-wei Zhang
    Da-cheng Huang
    Jiang-qin Gui
    Wen-zhong Ye
    Journal of Central South University, 2014, 21 : 4553 - 4562
  • [25] COMPARISON OF 2-D GEL-ELECTROPHORESIS IMAGES
    IP, HHS
    POTTER, DJ
    PATTERN RECOGNITION LETTERS, 1987, 5 (01) : 81 - 86
  • [26] Geometric alignment of 2D gel electrophoresis images using physics-based elastic registration
    Woerz, Stefan
    Winz, Marie-Luise
    Rohr, Karl
    2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4, 2008, : 1135 - +
  • [27] Bayesian inference for 2D gel electrophoresis image analysis
    Yoon, Ji Won
    Godsill, Simon J.
    Kang, ChulHun
    Kim, Tae-Seong
    BIOINFORMATICS RESEARCH AND DEVELOPMENT, PROCEEDINGS, 2007, 4414 : 343 - +
  • [28] 2-D electrophoresis gel registration using feature matching
    Rogers, M
    Graham, J
    Tonge, RR
    2004 2ND IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1 AND 2, 2004, : 1436 - 1439
  • [29] Sample size and replication in 2D gel electrophoresis studies
    Horgan, Graham W.
    JOURNAL OF PROTEOME RESEARCH, 2007, 6 (07) : 2884 - 2887
  • [30] Structural matching of 2D electrophoresis gels using deformed graphs
    Noma, Alexandre
    Pardo, Alvaro
    Cesar, Roberto M., Jr.
    PATTERN RECOGNITION LETTERS, 2011, 32 (01) : 3 - 11