Transcriptome Analysis of Four Arabidopsis thaliana Mediator Tail Mutants Reveals Overlapping and Unique Functions in Gene Regulation

被引:17
|
作者
Dolan, Whitney L.
Chapple, Clint
机构
[1] Dept Biochem, W Lafayette, IN 47907 USA
[2] Purdue Ctr Plant Biol, W Lafayette, IN 47907 USA
来源
G3-GENES GENOMES GENETICS | 2018年 / 8卷 / 09期
关键词
Mediator; Arabidopsis; transcription regulation; gene expression; RNA-POLYMERASE-II; MEDIATOR COMPLEX SUBUNIT16; SACCHAROMYCES-CEREVISIAE; IN-VIVO; PREINITIATION COMPLEX; PLANT DEVELOPMENT; KEY REGULATOR; EXPRESSION; YEAST; MODULE;
D O I
10.1534/g3.118.200573
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The Mediator complex is a central component of transcriptional regulation in Eukaryotes. The complex is structurally divided into four modules known as the head, middle, tail and kinase modules, and in Arabidopsis thaliana, comprises 28-34 subunits. Here, we explore the functions of four Arabidopsis Mediator tail subunits, MED2, MED5a/b, MED16, and MED23, by comparing the impact of mutations in each on the Arabidopsis transcriptome. We find that these subunits affect both unique and overlapping sets of genes, providing insight into the functional and structural relationships between them. The mutants primarily exhibit changes in the expression of genes related to biotic and abiotic stress. We find evidence for a tissue specific role for MED23, as well as in the production of alternative transcripts. Together, our data help disentangle the individual contributions of these MED subunits to global gene expression and suggest new avenues for future research into their functions.
引用
收藏
页码:3093 / 3108
页数:16
相关论文
共 50 条
  • [41] Long-read direct RNA sequencing reveals epigenetic regulation of chimeric gene-transposon transcripts in Arabidopsis thaliana
    Jérémy Berthelier
    Leonardo Furci
    Shuta Asai
    Munissa Sadykova
    Tomoe Shimazaki
    Ken Shirasu
    Hidetoshi Saze
    Nature Communications, 14
  • [42] Long-read direct RNA sequencing reveals epigenetic regulation of chimeric gene-transposon transcripts in Arabidopsis thaliana
    Berthelier, Jeremy
    Furci, Leonardo
    Asai, Shuta
    Sadykova, Munissa
    Shimazaki, Tomoe
    Shirasu, Ken
    Saze, Hidetoshi
    NATURE COMMUNICATIONS, 2023, 14 (01)
  • [43] Comparative transcriptome analysis reveals gene network regulation of TGase-induced thermotolerance in tomato
    Jahan, Mohammad S.
    Shi, Zhengrong
    Zhong, Min
    Zhang, Yuemei
    Zhou, Ranran
    El-Mogy, Mohamed M.
    Sun, Jin
    Shu, Sheng
    Guo, Shirong
    Wang, Yu
    NOTULAE BOTANICAE HORTI AGROBOTANICI CLUJ-NAPOCA, 2021, 49 (01) : 1 - 14
  • [44] Genetic analysis of the Replication Protein A large subunit family in Arabidopsis reveals unique and overlapping roles in DNA repair, meiosis and DNA replication
    Aklilu, Behailu B.
    Soderquist, Ryan S.
    Culligan, Kevin M.
    NUCLEIC ACIDS RESEARCH, 2014, 42 (05) : 3104 - 3118
  • [45] Comparative transcriptome analysis reveals different functions of Kandelia obovata superoxide dismutases in regulation of cadmium translocation
    Pan, Chenglang
    Lu, Haoliang
    Yang, Chuanyu
    Wang, Lu
    Chen, Jianming
    Yan, Chongling
    SCIENCE OF THE TOTAL ENVIRONMENT, 2021, 771
  • [46] Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis
    Phuong Anh Pham
    Wahl, Vanessa
    Tohge, Takayuki
    de Souza, Laise Rosado
    Zhang, Youjun
    Phuc Thi Do
    Olas, Justyna J.
    Stitt, Mark
    Araujo, Wagner L.
    Fernie, Alisdair R.
    PLANT MOLECULAR BIOLOGY, 2015, 89 (4-5) : 319 - 338
  • [47] Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis
    Phuong Anh Pham
    Vanessa Wahl
    Takayuki Tohge
    Laise Rosado de Souza
    Youjun Zhang
    Phuc Thi Do
    Justyna J. Olas
    Mark Stitt
    Wagner L. Araújo
    Alisdair R. Fernie
    Plant Molecular Biology, 2015, 89 : 319 - 338
  • [48] Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins
    Glauber Costa Brito
    Wiebke Schormann
    Satinder K. Gidda
    Robert T. Mullen
    David W. Andrews
    BMC Genomics, 20
  • [49] Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins
    Brito, Glauber Costa
    Schormann, Wiebke
    Gidda, Satinder K.
    Mullen, Robert T.
    Andrews, David W.
    BMC GENOMICS, 2019, 20 (01)
  • [50] Analysis of the chromatin domain organisation around the plastocyanin gene reveals an MAR-specific sequence element in Arabidopsis thaliana
    vanDrunen, CM
    Oosterling, RW
    Keultjes, GM
    Weisbeek, PJ
    vanDriel, R
    Smeekens, SCM
    NUCLEIC ACIDS RESEARCH, 1997, 25 (19) : 3904 - 3911