Transcriptome Analysis of Four Arabidopsis thaliana Mediator Tail Mutants Reveals Overlapping and Unique Functions in Gene Regulation

被引:17
|
作者
Dolan, Whitney L.
Chapple, Clint
机构
[1] Dept Biochem, W Lafayette, IN 47907 USA
[2] Purdue Ctr Plant Biol, W Lafayette, IN 47907 USA
来源
G3-GENES GENOMES GENETICS | 2018年 / 8卷 / 09期
关键词
Mediator; Arabidopsis; transcription regulation; gene expression; RNA-POLYMERASE-II; MEDIATOR COMPLEX SUBUNIT16; SACCHAROMYCES-CEREVISIAE; IN-VIVO; PREINITIATION COMPLEX; PLANT DEVELOPMENT; KEY REGULATOR; EXPRESSION; YEAST; MODULE;
D O I
10.1534/g3.118.200573
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The Mediator complex is a central component of transcriptional regulation in Eukaryotes. The complex is structurally divided into four modules known as the head, middle, tail and kinase modules, and in Arabidopsis thaliana, comprises 28-34 subunits. Here, we explore the functions of four Arabidopsis Mediator tail subunits, MED2, MED5a/b, MED16, and MED23, by comparing the impact of mutations in each on the Arabidopsis transcriptome. We find that these subunits affect both unique and overlapping sets of genes, providing insight into the functional and structural relationships between them. The mutants primarily exhibit changes in the expression of genes related to biotic and abiotic stress. We find evidence for a tissue specific role for MED23, as well as in the production of alternative transcripts. Together, our data help disentangle the individual contributions of these MED subunits to global gene expression and suggest new avenues for future research into their functions.
引用
收藏
页码:3093 / 3108
页数:16
相关论文
共 50 条
  • [1] Analysis of gene expression in gravitropism mutants of Arabidopsis thaliana
    Rosen, ES
    Poff, KL
    PLANT PHYSIOLOGY, 1996, 111 (02) : 722 - 722
  • [2] Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation
    Graf, Alexander
    Coman, Diana
    Uhrig, R. Glen
    Walsh, Sean
    Flis, Anna
    Stitt, Mark
    Gruissem, Wilhelm
    OPEN BIOLOGY, 2017, 7 (03)
  • [3] A Comprehensive Genetic Analysis of the RPA70 Gene Family in Arabidopsis thaliana Reveals Unique and Overlapping Roles in DNA Repair, Replication, and Meiosis
    Aklilu, B. B.
    Culligan, K. M.
    IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL, 2013, 49 : S69 - S69
  • [4] Investigating the functions of ascorbate through biochemical and gene expression analysis of ascorbate deficient Arabidopsis thaliana mutants
    Colville, L.
    COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 2005, 141 (03): : S288 - S288
  • [5] Comparative transcriptome analysis reveals significant differences in the regulation of gene expression between hydrogen cyanide- and ethylene-treated Arabidopsis thaliana
    Lulu Yu
    Yang Liu
    Fei Xu
    BMC Plant Biology, 19
  • [6] Comparative transcriptome analysis reveals significant differences in the regulation of gene expression between hydrogen cyanide- and ethylene-treated Arabidopsis thaliana
    Yu, Lulu
    Liu, Yang
    Xu, Fei
    BMC PLANT BIOLOGY, 2019, 19 (1)
  • [7] Global transcriptome analysis reveals circadian control of splicing events in Arabidopsis thaliana
    Romanowski, Andres
    Schlaen, Ruben G.
    Perez-Santangelo, Soledad
    Mancini, Estefania
    Yanovsky, Marcelo J.
    PLANT JOURNAL, 2020, 103 (02): : 889 - 902
  • [8] Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana:: Unique and overlapping functions of ARF7 and ARF19
    Okushima, Y
    Overvoorde, PJ
    Arima, K
    Alonso, JM
    Chan, A
    Chang, C
    Ecker, JR
    Hughes, B
    Lui, A
    Nguyen, D
    Onodera, C
    Quach, H
    Smith, A
    Yu, GX
    Theologis, A
    PLANT CELL, 2005, 17 (02): : 444 - 463
  • [9] Comprehensive Transcriptome Analysis of Arabidopsis thaliana DNA Polymerase Epsilon Catalytic Subunit A and B Mutants
    Anushka M. Wickramasuriya
    Thulani M. Hewavithana
    Kithmee K. de Silva
    Ihsan Ullah
    Jim M. Dunwell
    Tropical Plant Biology, 2023, 16 : 12 - 31
  • [10] Comprehensive Transcriptome Analysis of Arabidopsis thaliana DNA Polymerase Epsilon Catalytic Subunit A and B Mutants
    Wickramasuriya, Anushka M.
    Hewavithana, Thulani M.
    de Silva, Kithmee K.
    Ullah, Ihsan
    Dunwell, Jim M.
    TROPICAL PLANT BIOLOGY, 2023, 16 (1-2) : 12 - 31