Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)

被引：119

作者：

Rangwala, Sanjida H. ^{[1
]}

Kuznetsov, Anatoliy ^{[1
]}

Ananiev, Victor ^{[1
]}

Asztalos, Andrea ^{[1
]}

Borodin, Evgeny ^{[1
]}

Evgeniev, Vladislav ^{[1
]}

Joukov, Victor ^{[1
]}

Lotov, Vadim ^{[1
]}

Pannu, Ravinder ^{[1
]}

Rudnev, Dmitry ^{[1
]}

Shkeda, Andrew ^{[1
]}

Weitz, Eric M. ^{[1
,2
]}

Schneider, Valerie A. ^{[1
]}

机构：

[1] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20894 USA

[2] Broad Inst MIT & Harvard, Cambridge, MA 02142 USA

来源：

GENOME RESEARCH | 2021年 / 31卷 / 01期

基金：

美国国家卫生研究院;

关键词：

VISUALIZATION; BROWSER;

D O I：

10.1101/gr.266932.120

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The National Center for Biotechnology Information (NCB!) is an archive providing free access to a wide range and large volume of biological sequence data and literature. Staff scientists at NCBI analyze user-submitted data in the archive, producing gene and SNP annotation and generating sequence alignment tools. NCBI's flagship genome browser, Genome Data Viewer (GDV), displays our in-house RefSeq annotation; is integrated with other NCBI resources such as Gene, dbGaP, and BLAST; and provides a platform for customized analysis and visualization. Here, we describe how members of the biomedical research community can use GDV and the related NCBI Sequence Viewer (SV) to access, analyze, and disseminate NCBI and custom biomedical sequence data. In addition, we report how users can add SV to their own web pages to create a custom graphical sequence display without the need for infrastructure investments or back-end deployments.

引用

页码：159 / 169

页数：11

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