Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)

被引:119
|
作者
Rangwala, Sanjida H. [1 ]
Kuznetsov, Anatoliy [1 ]
Ananiev, Victor [1 ]
Asztalos, Andrea [1 ]
Borodin, Evgeny [1 ]
Evgeniev, Vladislav [1 ]
Joukov, Victor [1 ]
Lotov, Vadim [1 ]
Pannu, Ravinder [1 ]
Rudnev, Dmitry [1 ]
Shkeda, Andrew [1 ]
Weitz, Eric M. [1 ,2 ]
Schneider, Valerie A. [1 ]
机构
[1] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20894 USA
[2] Broad Inst MIT & Harvard, Cambridge, MA 02142 USA
基金
美国国家卫生研究院;
关键词
VISUALIZATION; BROWSER;
D O I
10.1101/gr.266932.120
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The National Center for Biotechnology Information (NCB!) is an archive providing free access to a wide range and large volume of biological sequence data and literature. Staff scientists at NCBI analyze user-submitted data in the archive, producing gene and SNP annotation and generating sequence alignment tools. NCBI's flagship genome browser, Genome Data Viewer (GDV), displays our in-house RefSeq annotation; is integrated with other NCBI resources such as Gene, dbGaP, and BLAST; and provides a platform for customized analysis and visualization. Here, we describe how members of the biomedical research community can use GDV and the related NCBI Sequence Viewer (SV) to access, analyze, and disseminate NCBI and custom biomedical sequence data. In addition, we report how users can add SV to their own web pages to create a custom graphical sequence display without the need for infrastructure investments or back-end deployments.
引用
收藏
页码:159 / 169
页数:11
相关论文
共 50 条
  • [31] CGV: Cancer Genome Viewer, a web service for integrative cancer genome and pharmacogenomic data analysis
    Choi, Ji-Hye
    Choi, Hui-Seon
    Cho, Seong-Ho
    Lee, Ji-Hye
    Woo, Hyun Goo
    BIOINFORMATICS, 2022, 38 (22) : 5116 - 5118
  • [32] MViewer: mobile phone spatiotemporal data viewer
    Jiansu Pu
    Siyuan Liu
    Panpan Xu
    Huamin Qu
    Lionel M. Ni
    Frontiers of Computer Science, 2014, 8 : 298 - 315
  • [33] FRELLED: A realtime volumetric data viewer for astronomers
    Taylor, R.
    ASTRONOMY AND COMPUTING, 2015, 13 : 67 - 79
  • [34] INDEPENDENT VIEWER FOR OPTICAL-DATA CARDS
    SIEDBAND, MP
    GRENZOW, FC
    IMAGES OF THE TWENTY-FIRST CENTURY, PTS 1-6, 1989, 11 : 775 - 776
  • [35] NCBI GEO: archive for high-throughput functional genomic data
    Barrett, Tanya
    Troup, Dennis B.
    Wilhite, Stephen E.
    Ledoux, Pierre
    Rudnev, Dmitry
    Evangelista, Carlos
    Kim, Irene F.
    Soboleva, Alexandra
    Tomashevsky, Maxim
    Marshall, Kimberly A.
    Phillippy, Katherine H.
    Sherman, Patti M.
    Muertter, Rolf N.
    Edgar, Ron
    NUCLEIC ACIDS RESEARCH, 2009, 37 : D885 - D890
  • [36] GEOPORTAL AKOS - ELECTRONIC COMMUNICATIONS DATA VIEWER
    Sturm, Tomaz
    Baliz, Gregor
    Simoncic, Marko
    Mesner, Nika
    GEODETSKI VESTNIK, 2020, 64 (04) : 617 - 626
  • [37] Patient Data Viewer: An Android Application for Healthcare
    Challa, Samyuktha
    Geethakumari, G.
    Prasad, C. S. N.
    2011 ANNUAL IEEE INDIA CONFERENCE (INDICON-2011): ENGINEERING SUSTAINABLE SOLUTIONS, 2011,
  • [38] MViewer: mobile phone spatiotemporal data viewer
    Pu, Jiansu
    Liu, Siyuan
    Xu, Panpan
    Qu, Huamin
    Ni, Lionel M.
    FRONTIERS OF COMPUTER SCIENCE, 2014, 8 (02) : 298 - 315
  • [39] A Pilot Interactive Data Viewer for Cancer Screening
    Dusek, Ladislav
    Muzik, Jan
    Karolyi, Matej
    Salko, Michal
    Maluskova, Denisa
    Komenda, Martin
    ENVIRONMENTAL SOFTWARE SYSTEMS: COMPUTER SCIENCE FOR ENVIRONMENTAL PROTECTION, 2017, 507 : 173 - 183
  • [40] HRPDviewer: human ribosome profiling data viewer
    Wu, Wei-Sheng
    Jiang, Yu-Xuan
    Chang, Jer-Wei
    Chu, Yu-Han
    Chiu, Yi-Hao
    Tsao, Yi-Hong
    Nordling, Torbjorn E. M.
    Tseng, Yan-Yuan
    Tseng, Joseph T.
    DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2018,