Design of artificial genetic regulatory networks with multiple delayed adaptive responses

被引:4
|
作者
Kaluza, Pablo [1 ,2 ,3 ]
Inoue, Masayo [4 ,5 ]
机构
[1] Natl Univ Cuyo, Natl Sci & Tech Res Council, Padre Contreras 1300, RA-5500 Mendoza, Argentina
[2] Natl Univ Cuyo, Fac Exact & Nat Sci, Padre Contreras 1300, RA-5500 Mendoza, Argentina
[3] Max Planck Gesell, Fritz Haber Inst, Phys Chem Abt, Faradayweg 4-6, D-14195 Berlin, Germany
[4] Natl Inst Adv Ind Sci & Technol, Mol Profiling Res Ctr Drug Discovery, 2-4-7 Aomi, Tokyo 1350064, Japan
[5] Osaka Univ, Cybermedia Ctr, Toyonaka, Osaka 5600043, Japan
来源
EUROPEAN PHYSICAL JOURNAL B | 2016年 / 89卷 / 06期
关键词
ENVIRONMENTAL-CHANGES; ADAPTATION; EXPRESSION; ROBUST;
D O I
10.1140/epjb/e2016-70172-9
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
Genetic regulatory networks with adaptive responses are widely studied in biology. Usually, models consisting only of a few nodes have been considered. They present one input receptor for activation and one output node where the adaptive response is computed. In this work, we design genetic regulatory networks with many receptors and many output nodes able to produce delayed adaptive responses. This design is performed by using an evolutionary algorithm of mutations and selections that minimizes an error function defined by the adaptive response in signal shapes. We present several examples of network constructions with a predefined required set of adaptive delayed responses. We show that an output node can have different kinds of responses as a function of the activated receptor. Additionally, complex network structures are presented since processing nodes can be involved in several input-output pathways.
引用
收藏
页数:11
相关论文
共 50 条
  • [31] Decentralized PI Controller Design for Robust Perfect Adaptation in Noisy Time-Delayed Genetic Regulatory Networks
    Mohammadian, Mohammad
    Karimi, Hazhar Sufi
    NEURAL PROCESSING LETTERS, 2023, 55 (05) : 6815 - 6842
  • [32] Design of adaptive load shedding by artificial neural networks
    Hsu, CT
    Kang, MS
    Chen, CS
    IEE PROCEEDINGS-GENERATION TRANSMISSION AND DISTRIBUTION, 2005, 152 (03) : 415 - 421
  • [33] Consideration of mobile DNA: new forms of artificial genetic regulatory networks
    Bull, Larry
    NATURAL COMPUTING, 2013, 12 (04) : 443 - 452
  • [34] Consideration of mobile DNA: new forms of artificial genetic regulatory networks
    Larry Bull
    Natural Computing, 2013, 12 : 443 - 452
  • [35] Cooperative Adaptive Responses in Gene Regulatory Networks with Many Degrees of Freedom
    Inoue, Masayo
    Kaneko, Kunihiko
    PLOS COMPUTATIONAL BIOLOGY, 2013, 9 (04)
  • [36] Stability and Hopf Bifurcation of Genetic Regulatory Networks with Multiple Delays
    Chen, Gang
    Xiao, Min
    Jiang, Guo-Ping
    2015 27TH CHINESE CONTROL AND DECISION CONFERENCE (CCDC), 2015, : 2454 - 2459
  • [37] A new multiple regression approach for the construction of genetic regulatory networks
    Zhang, Shu-Qin
    Ching, Wai-Ki
    Tsing, Nam-Kiu
    Leung, Ho-Yin
    Guo, Dianjing
    ARTIFICIAL INTELLIGENCE IN MEDICINE, 2010, 48 (2-3) : 153 - 160
  • [38] Stability analysis of genetic regulatory networks with multiple time delays
    Wu, Fang-Xiang
    2007 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-16, 2007, : 1387 - 1390
  • [39] Recovering genetic regulatory networks by integrating multiple data sources
    Zhao, Wentao
    Serpedin, Erchin
    Dougherty, Edward R.
    2007 IEEE INTERNATIONAL WORKSHOP ON GENOMIC SIGNAL PROCESSING AND STATISTICS, 2007, : 1 - 2
  • [40] Three stability criteria for delayed stochastic genetic regulatory networks and their conservativeness analysis
    Wang, Jing
    Cui, Shaochun
    Zhang, Xian
    Wang, Yantao
    26TH CHINESE CONTROL AND DECISION CONFERENCE (2014 CCDC), 2014, : 1745 - 1750