Tools for adaptive immune receptor repertoire sequencing

被引：3
|
作者：
Lees, William D. [1 ]
机构：
[1] Birkbeck Coll, Inst Struct & Mol Biol, Malet St, London WC1E 7HX, England
来源：
CURRENT OPINION IN SYSTEMS BIOLOGY | 2020年 / 24卷
关键词：
Antibody repertoire sequencing; Immune receptor genes; AIRR-seq tools; Rep-seq tools; CLONALITY INFERENCE; T-CELL; IMMUNOGLOBULIN;
D O I：
10.1016/j.coisb.2020.10.003
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
Tools for adaptive immune receptor repertoire (AIRR) sequencing continue to evolve rapidly, and, although some established frameworks are emerging, there are no complete solutions: it is necessary to select tools and build a customised pipeline. Emerging trends of interest include standards for data interchange, tools for single-cell sequencing, genotyping, and tools that make use of probabilistic and structural inferences to identify receptor sequences of interest.
引用
收藏
页码：86 / 92
页数：7
相关论文
共 50 条
  • [31] T and B Cell Receptor Immune Repertoire Analysis using Next-generation Sequencing
    Werner, Lael
    Dor, Chen
    Salamon, Naomi
    Nagar, Meital
    Shouval, Dror S.
    JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2021, (167): : 1 - 12
  • [32] Immune receptor repertoire for influenza haemagglutinin
    Thomas, DB
    Patera, A
    Graham, CM
    Smith, CA
    BIOSCIENCE REPORTS, 1995, 15 (06) : 481 - 492
  • [33] Evaluation of three next generation sequencing platforms for immune repertoire sequencing
    Wang, Chunlin
    Levy, Shawn
    Yang, Qunying
    Byrne-Steele, Miranda
    Han, Jian
    JOURNAL OF IMMUNOLOGY, 2012, 188
  • [34] Deep sequencing of B cell receptor repertoire
    Kim, Daeun
    Park, Daechan
    BMB REPORTS, 2019, 52 (09) : 540 - 547
  • [35] Immune repertoire sequencing for precision diagnosis in kidney transplantation
    Liang, Lifei
    Chen, Tingting
    Zhu, Tongyu
    Yang, Cheng
    JOURNAL OF TRANSLATIONAL MEDICINE, 2024, 22 (01)
  • [36] Basic research and clinical application of immune repertoire sequencing
    Hou, Xianliang
    Chen, Jianing
    Wang, Lin
    Dai, Yong
    Diao, Hongyan
    INTERNATIONAL JOURNAL OF CLINICAL AND EXPERIMENTAL MEDICINE, 2016, 9 (10): : 18868 - 18882
  • [37] Immune repertoire sequencing enables accurate clonality determination
    Song, Chen
    Erijman, Ariel
    Lund, Sean
    Langhorst, Bradley W.
    Liu, Pingfang
    CANCER RESEARCH, 2023, 83 (07)
  • [38] Qualifying high-throughput immune repertoire sequencing
    Niklas, Norbert
    Proell, Johannes
    Weinberger, Johannes
    Zopf, Agnes
    Wiesinger, Karin
    Krismer, Konstantin
    Bettelheim, Peter
    Gabriel, Christian
    CELLULAR IMMUNOLOGY, 2014, 288 (1-2) : 31 - 38
  • [39] HIGH THROUGHPUT SEQUENCING OF IMMUNE REPERTOIRE FOR BIOMARKER DISCOVERY
    Jian, Han
    PROGRESS ON POST-GENOME TECHNOLOGIES AND MODERN NATURAL PRODUCTS, 2011, 2011, : 19 - 20
  • [40] Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification
    Kanduri, Chakravarthi
    Pavlovic, Milena
    Scheffer, Lonneke
    Motwani, Keshav
    Chernigovskaya, Maria
    Greiff, Victor
    Sandve, Geir K.
    GIGASCIENCE, 2022, 11
12345