Analytical Description of NMR Relaxation Highlights Correlated Dynamics in Intrinsically Disordered Proteins

被引:41
|
作者
Salvi, Nicola [1 ]
Abyzov, Anton [1 ]
Blackledge, Martin [1 ]
机构
[1] UGA, CEA, CNRS, Inst Biol Struct, Grenoble, France
基金
瑞士国家科学基金会;
关键词
intrinsically disordered proteins; molecular dynamics simulation; NMR spectroscopy; protein dynamics; segmental motions; ALKOXYSILOXANE OLIGOMERS; SILICA; POLYALKOXYSILOXANES; CONDENSATION; SILOXANES; SILANOLS; HYBRIDS; BLOCKS;
D O I
10.1002/anie.201706740
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The dynamic fluctuations of intrinsically disordered proteins (IDPs) define their function. Although experimental nuclear magnetic resonance (NMR) relaxation reveals the motional complexity of these highly flexible proteins, the absence of physical models describing IDP dynamics hinders their mechanistic interpretation. Combining molecular dynamics simulation and NMR, we introduce a framework in which distinct motions are attributed to local libration, backbone dihedral angle dynamics and longer-range tumbling of one or more peptide planes. This model provides unique insight into segmental organization of dynamics in IDPs and allows us to investigate the presence and extent of the correlated motions that are essential for function.
引用
收藏
页码:14020 / 14024
页数:5
相关论文
共 50 条
  • [31] Recombinant Intrinsically Disordered Proteins for NMR: Tips and Tricks
    Calcada, Eduardo O.
    Korsak, Magdalena
    Kozyreva, Tatiana
    INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 187 - 213
  • [32] Electrostatics and hydrophobicity in the dynamics of intrinsically disordered proteins
    Vancraenenbroeck, Renee
    Hofmann, Hagen
    EUROPEAN PHYSICAL JOURNAL E, 2023, 46 (12):
  • [33] Hydrogen Bond Dynamics in Intrinsically Disordered Proteins
    Rawat, Nidhi
    Biswas, Parbati
    JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (11): : 3018 - 3025
  • [34] A Unified Description of Intrinsically Disordered Protein Dynamics under Physiological Conditions Using NMR Spectroscopy
    Adamski, Wiktor
    Salvi, Nicola
    Maurin, Damien
    Magnat, Justine
    Milles, Sigrid
    Jensen, Malene Ringkjobing
    Abyzov, Anton
    Moreau, Christophe J.
    Blackledge, Martin
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2019, 141 (44) : 17817 - 17829
  • [35] Ensemble Calculation for Intrinsically Disordered Proteins Using NMR Parameters
    Kragelj, Jaka
    Blackledge, Martin
    Jensen, Malene Ringkjobing
    INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 123 - 147
  • [36] Molecular Dynamics Simulations of Phosphorylated Intrinsically Disordered Proteins
    Haas-Neill, Liam I.
    Rauscher, Sarah
    BIOPHYSICAL JOURNAL, 2019, 116 (03) : 432A - 433A
  • [37] NMR Spectroscopic Studies of the Conformational Ensembles of Intrinsically Disordered Proteins
    Kurzbach, Dennis
    Kontaxis, Georg
    Coudevylle, Nicolas
    Konrat, Robert
    INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 149 - 185
  • [38] Toward optimal-resolution NMR of intrinsically disordered proteins
    Novacek, Jiri
    Zidek, Lukas
    Sklenar, Vladimir
    JOURNAL OF MAGNETIC RESONANCE, 2014, 241 : 41 - 52
  • [39] Dynamics Based Drug Design for Intrinsically Disordered Proteins
    Maity, Barun K.
    BIOPHYSICAL JOURNAL, 2018, 114 (03) : 590A - 590A
  • [40] Effects of Molecular Crowding on the Dynamics of Intrinsically Disordered Proteins
    Cino, Elio A.
    Karttunen, Mikko
    Choy, Wing-Yiu
    PLOS ONE, 2012, 7 (11):