Analytical Description of NMR Relaxation Highlights Correlated Dynamics in Intrinsically Disordered Proteins

被引:41
|
作者
Salvi, Nicola [1 ]
Abyzov, Anton [1 ]
Blackledge, Martin [1 ]
机构
[1] UGA, CEA, CNRS, Inst Biol Struct, Grenoble, France
基金
瑞士国家科学基金会;
关键词
intrinsically disordered proteins; molecular dynamics simulation; NMR spectroscopy; protein dynamics; segmental motions; ALKOXYSILOXANE OLIGOMERS; SILICA; POLYALKOXYSILOXANES; CONDENSATION; SILOXANES; SILANOLS; HYBRIDS; BLOCKS;
D O I
10.1002/anie.201706740
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The dynamic fluctuations of intrinsically disordered proteins (IDPs) define their function. Although experimental nuclear magnetic resonance (NMR) relaxation reveals the motional complexity of these highly flexible proteins, the absence of physical models describing IDP dynamics hinders their mechanistic interpretation. Combining molecular dynamics simulation and NMR, we introduce a framework in which distinct motions are attributed to local libration, backbone dihedral angle dynamics and longer-range tumbling of one or more peptide planes. This model provides unique insight into segmental organization of dynamics in IDPs and allows us to investigate the presence and extent of the correlated motions that are essential for function.
引用
收藏
页码:14020 / 14024
页数:5
相关论文
共 50 条
  • [11] Detection of correlated conformational fluctuations in intrinsically disordered proteins through paramagnetic relaxation interference
    Kurzbach, D.
    Vanas, A.
    Flamm, A. G.
    Tarnoczi, N.
    Kontaxis, G.
    Maltar-Strmecki, N.
    Widder, K.
    Hinderberger, D.
    Konrat, R.
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (08) : 5753 - 5758
  • [12] Dynamics and interactions of intrinsically disordered proteins
    Arai, Munehito
    Suetaka, Shunji
    Ooka, Koji
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2024, 84
  • [13] Application of NMR to studies of intrinsically disordered proteins
    Gibbs, Eric B.
    Cook, Erik C.
    Showalter, Scott A.
    ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2017, 628 : 57 - 70
  • [14] Structure and Dynamics of Intrinsically Disordered Proteins
    Fu, Biao
    Vendruscolo, Michele
    INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 35 - 48
  • [15] An Approach to NMR Assignment of Intrinsically Disordered Proteins
    Goradia, Nishit
    Wiedemann, Christoph
    Herbst, Christian
    Goerlach, Matthias
    Heinemann, Stefan H.
    Ohlenschlaeger, Oliver
    Ramachandran, Ramadurai
    CHEMPHYSCHEM, 2015, 16 (04) : 739 - 746
  • [16] Intrinsically disordered proteins studied by NMR spectroscopy
    Schiavina, Marco
    Bracaglia, Lorenzo
    Bolognesi, Tessa
    Rodella, Maria Anna
    Tagliaferro, Giuseppe
    Tino, Angela Sofia
    Pierattelli, Roberta
    Felli, Isabella C.
    JOURNAL OF MAGNETIC RESONANCE OPEN, 2024, 18
  • [17] Characterization of Intrinsically Disordered Proteins by Analytical Ultracentrifugation
    Scott, David J.
    Winzor, Donald J.
    ANALYTICAL ULTRACENTRIFUGATION, 2015, 562 : 225 - 239
  • [18] NMR Provides Unique Insight into the Functional Dynamics and Interactions of Intrinsically Disordered Proteins
    Camacho-Zarco, Aldo R.
    Schnapka, Vincent
    Guseva, Serafima
    Abyzov, Anton
    Adamski, Wiktor
    Milles, Sigrid
    Jensen, Malene Ringkjobing
    Zidek, Lukas
    Salvi, Nicola
    Blackledge, Martin
    CHEMICAL REVIEWS, 2022, 122 (10) : 9331 - 9356
  • [19] Analysis of dynamics in an intrinsically disordered protein using NMR relaxation by grouping residues in segments
    Abyzov, A.
    Salvi, N.
    Blackledge, M.
    JOURNAL OF BIOENERGETICS AND BIOMEMBRANES, 2018, 50 (06) : 520 - 520
  • [20] Paramagnetic relaxation enhancement to improve sensitivity of fast NMR methods: application to intrinsically disordered proteins
    Theillet, Francois-Xavier
    Binolfi, Andres
    Liokatis, Stamatis
    Verzini, Silvia
    Selenko, Philipp
    JOURNAL OF BIOMOLECULAR NMR, 2011, 51 (04) : 487 - 495