Isolation and characterization of fourteen microsatellite loci for Asiatic toad (Bufo gargarizans) at high altitude through transcriptome sequencing

被引:5
|
作者
Li, Na [1 ,2 ]
Wen, Guannan [1 ,2 ]
Yang, Weizhao [1 ]
Fu, Jinzhong [1 ,3 ]
机构
[1] Chinese Acad Sci, Chengdu Inst Biol, Chengdu 610041, Peoples R China
[2] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
[3] Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada
基金
中国国家自然科学基金;
关键词
Microsatellites; Asiatic toad; High altitude; Transcriptome sequencing;
D O I
10.1007/s12686-014-0382-6
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
Amphibians are declining at an alarming rate across the world. The species living at extreme environments are particularly vulnerable to extinction. Asiatic toad (Bufo gargarizans) is one of few amphibians at very high altitude and we have known little about their genetic diversity and conservation situations among highland populations. Using transcriptome sequencing, fourteen novel microsatellite markers were developed for Asiatic toad. To characterize these loci, two populations of Asiatic toad from Tibetan Plateau were genotyped. All loci were variable, with the number of alleles ranging from 1 to 15 within populations. The expected and observed heterozygosity per locus ranged from 0.00 to 0.87 and from 0.00 to 0.89, respectively. Two of these loci showed significant deviations from Hardy-Weinberg equilibrium and no linkage disequilibrium was detected. We expect that these markers will provide useful tools in population genetics and conservation studies for Asiatic toad.
引用
收藏
页码:407 / 409
页数:3
相关论文
共 50 条
  • [41] Isolation and characterization of twelve novel polymorphic tetranucleotide microsatellite loci for Tsinling Tree Toad (Hyla tsinlingensis)
    Kang, Xing
    Wang, Hui
    Zhang, Jie
    Ding, Ling
    Pan, Tao
    Zhang, Baowei
    CONSERVATION GENETICS RESOURCES, 2015, 7 (03) : 723 - 724
  • [42] Isolation and characterization of thirteen microsatellite loci for the western black crested gibbon (Nomascus concolor) by high-throughput sequencing
    Naiqing Hu
    Orkin Joseph
    Bei Huang
    Kai He
    Xuelong Jiang
    Conservation Genetics Resources, 2014, 6 : 179 - 181
  • [43] Isolation and characterization of thirteen microsatellite loci for the western black crested gibbon (Nomascus concolor) by high-throughput sequencing
    Hu, Naiqing
    Joseph, Orkin
    Huang, Bei
    He, Kai
    Jiang, Xuelong
    CONSERVATION GENETICS RESOURCES, 2014, 6 (01) : 179 - 181
  • [44] Isolation and characterization of two dinucleotide and four tetranucleotide polymorphic microsatellite loci in the Iberian midwife toad Alytes cistemasii
    Gonçalves, H
    Pereira, R
    Rowe, G
    Beebee, T
    Ferrand, N
    MOLECULAR ECOLOGY NOTES, 2005, 5 (04): : 767 - 769
  • [45] Isolation and characterization of 13 microsatellite loci for the Neotropical otter, Lontra longicaudis, by next generation sequencing
    Camila Latorre-Cardenas, Maria
    Gutierrez-Rodriguez, Carla
    Lance, Stacey L.
    MOLECULAR BIOLOGY REPORTS, 2020, 47 (01) : 731 - 736
  • [46] Isolation and characterization of 13 microsatellite loci for the Neotropical otter, Lontra longicaudis, by next generation sequencing
    María Camila Latorre-Cardenas
    Carla Gutiérrez-Rodríguez
    Stacey L. Lance
    Molecular Biology Reports, 2020, 47 : 731 - 736
  • [47] Identification and Characterization of miRNA Transcriptome in Asiatic Cotton (Gossypium arboreum) Using High Throughput Sequencing
    Farooq, Muhammad
    Mansoor, Shahid
    Guo, Hui
    Amin, Imran
    Chee, Peng W.
    Azim, M. Kamran
    Paterson, Andrew H.
    FRONTIERS IN PLANT SCIENCE, 2017, 8
  • [48] Isolation and characterization of 16 novel microsatellite loci in the roosterfish Nematistius pectoralis Gill, 1862 by Illumina sequencing
    Molina-Quiros, Jose
    Hernandez-Munoz, Sebastian
    JOURNAL OF APPLIED ICHTHYOLOGY, 2020, 36 (05) : 737 - 739
  • [49] Next-generation sequencing, isolation and characterization of 14 microsatellite loci of Canthon cyanellus (Coleoptera: Scarabaeidae)
    Arce-Valdes, Luis R.
    Sanchez-Guillen, Rosa Ana
    Nolasco-Soto, Janet
    Favila, Mario E.
    MOLECULAR BIOLOGY REPORTS, 2021, 48 (11) : 7433 - 7441
  • [50] Next-generation sequencing, isolation and characterization of 14 microsatellite loci of Canthon cyanellus (Coleoptera: Scarabaeidae)
    Luis Rodrigo Arce-Valdés
    Rosa Ana Sánchez-Guillén
    Janet Nolasco-Soto
    Mario E. Favila
    Molecular Biology Reports, 2021, 48 : 7433 - 7441