Isolation and characterization of fourteen microsatellite loci for Asiatic toad (Bufo gargarizans) at high altitude through transcriptome sequencing

被引:5
|
作者
Li, Na [1 ,2 ]
Wen, Guannan [1 ,2 ]
Yang, Weizhao [1 ]
Fu, Jinzhong [1 ,3 ]
机构
[1] Chinese Acad Sci, Chengdu Inst Biol, Chengdu 610041, Peoples R China
[2] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
[3] Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada
基金
中国国家自然科学基金;
关键词
Microsatellites; Asiatic toad; High altitude; Transcriptome sequencing;
D O I
10.1007/s12686-014-0382-6
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
Amphibians are declining at an alarming rate across the world. The species living at extreme environments are particularly vulnerable to extinction. Asiatic toad (Bufo gargarizans) is one of few amphibians at very high altitude and we have known little about their genetic diversity and conservation situations among highland populations. Using transcriptome sequencing, fourteen novel microsatellite markers were developed for Asiatic toad. To characterize these loci, two populations of Asiatic toad from Tibetan Plateau were genotyped. All loci were variable, with the number of alleles ranging from 1 to 15 within populations. The expected and observed heterozygosity per locus ranged from 0.00 to 0.87 and from 0.00 to 0.89, respectively. Two of these loci showed significant deviations from Hardy-Weinberg equilibrium and no linkage disequilibrium was detected. We expect that these markers will provide useful tools in population genetics and conservation studies for Asiatic toad.
引用
收藏
页码:407 / 409
页数:3
相关论文
共 50 条
  • [31] Isolation and characterization of 11 microsatellite loci in Scotophilus kuhlii (Lesser Asiatic Yellow House Bat)
    Yanhong Sun
    Dongmei Yu
    Guangjian Zhu
    Xusheng Liu
    Shuyi Zhang
    Jinping Chen
    Conservation Genetics, 2009, 10 : 1857 - 1859
  • [32] Isolation and characterization of 11 microsatellite loci in Scotophilus kuhlii (Lesser Asiatic Yellow House Bat)
    Sun, Yanhong
    Yu, Dongmei
    Zhu, Guangjian
    Liu, Xusheng
    Zhang, Shuyi
    Chen, Jinping
    CONSERVATION GENETICS, 2009, 10 (06) : 1857 - 1859
  • [33] Isolation and characterization of microsatellite DNA loci in the toad-headed lizards, Phrynocephalus przewalskii complex
    Urquhart, J
    Bi, K
    Gozdzik, A
    Fu, JZ
    MOLECULAR ECOLOGY NOTES, 2005, 5 (04): : 928 - 930
  • [34] Isolation and characterization of ten microsatellite loci for the Chong’an moustache toad Leptobrachium liui (Anura: Megophryidae)
    Lujun Hu
    Yun Xia
    Yuchi Zheng
    Xiaomao Zeng
    Conservation Genetics Resources, 2012, 4 : 877 - 879
  • [35] Isolation and characterization of ten microsatellite loci for the Chong'an moustache toad Leptobrachium liui (Anura: Megophryidae)
    Hu, Lujun
    Xia, Yun
    Zheng, Yuchi
    Zeng, Xiaomao
    CONSERVATION GENETICS RESOURCES, 2012, 4 (04) : 877 - 879
  • [36] Transcriptome Sequencing Provides Evidence of Genetic Assimilation in a Toad-Headed Lizard at High Altitude
    Yang, Weizhao
    Zhang, Tao
    Yao, Zhongyi
    Tang, Xiaolong
    Qi, Yin
    ASIAN HERPETOLOGICAL RESEARCH, 2021, 12 (03) : 315 - +
  • [37] Transcriptome Sequencing Provides Evidence of Genetic Assimilation in a Toad-Headed Lizard at High Altitude
    Weizhao YANG
    Tao ZHANG
    Zhongyi YAO
    Xiaolong TANG
    Yin QI
    Asian Herpetological Research, 2021, 12 (03) : 315 - 325
  • [38] Isolation and sequencing of doublesex/male abnormal 3 (DM) related transcription factor (Dmrt) genes from the Asian toad Bufo gargarizans (Cantor, 1842)
    Chen, Wen
    Nie, Liu-wang
    Zheng, Ping-Ping
    GENETICS AND MOLECULAR BIOLOGY, 2007, 30 (04) : 1189 - 1193
  • [39] Isolation and characterization of twelve novel polymorphic tetranucleotide microsatellite loci for Tsinling Tree Toad (Hyla tsinlingensis)
    Xing Kang
    Hui Wang
    Jie Zhang
    Ling Ding
    Tao Pan
    Baowei Zhang
    Conservation Genetics Resources, 2015, 7 : 723 - 724
  • [40] Isolation and characterization of microsatellite loci for the Potentilla core group (Rosaceae) using 454 sequencing
    Dobes, Ch.
    Scheffknecht, S.
    MOLECULAR ECOLOGY RESOURCES, 2012, 12 (04) : 726 - 739