The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position

被引:5
|
作者
Wong, Xue Jing [1 ]
Law, Douglas [1 ]
Wang, Zheng-Feng [2 ]
Ramaiya, Shiamala Devi [3 ]
Lee, Shiou Yih [1 ]
机构
[1] INTI Int Univ, Fac Hlth & Life Sci, Nilai 71800, Negeri Sembilan, Malaysia
[2] Chinese Acad Sci, Guangdong Prov Key Lab Appl Bot, South China Bot Garden, Guangzhou, Peoples R China
[3] Univ Putra Malaysia Bintulu, Fac Agr & Forestry Sci, Dept Crop Sci, Sarawak Campus, Bintulu, Malaysia
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 09期
关键词
Durian; Durioneae; genomic resource; next-generation sequencing; phylogenomics; COMPLETE PLASTOME SEQUENCE;
D O I
10.1080/23802359.2022.2123256
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Durio oxleyanus (Griff) of Malvaceae is considered a natural heritage by the countries that produce it, including Peninsular Malaysia, Sumatra, and Borneo. Even though the species is regarded as a commercially valuable fruit, cultivation of this species is uncommon. The dwindling population of this species in the wild has put its survival in jeopardy. Conservation efforts are required for this species, which are limited. In this study, the complete chloroplast (cp) genome of D. oxleyanus was assembled and characterized as a genomic resource for conservation programs. The complete cp genome size was 164,831 bp in length, with a pair of inverted repeats of 23,782 bp each, separating the 96,446-bp large and the 20,823-bp small single copies. A total of 135 genes were predicted, which consisted of 90 protein-coding, 37 tRNA, and eight rRNA genes. The overall GC content was 35.8%. The phylogenetic analysis based on the maximum-likelihood and Bayesian inference methods revealed that D. oxleyanus is closely related to D. zibethinus. The genomic data obtained will be useful for future studies of Malvaceae's phylogenetics and evolution.
引用
收藏
页码:1709 / 1712
页数:4
相关论文
共 50 条
  • [41] Characterization of the complete chloroplast genome sequence of Tinospora sagittata and its phylogenetic implications
    Peng, Cuiying
    Liang, Junsheng
    Xie, Qiaoying
    Wang, Xujun
    Guo, Wei
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 176 - 177
  • [42] The complete chloroplast genome sequence of Ulmus szechuanica (Ulmaceae) and its phylogenetic analysis
    Yan, Shufang
    Liu, Yichao
    Feng, Shuxiang
    Huang, Xiaoxu
    Huang, Yinran
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 2186 - 2187
  • [43] The complete chloroplast genome sequence and phylogenetic position of Lilaeopsis chinensis (L.) Kuntze (Apiaceae)
    Fang, Xiaoai
    Li, Peng
    Zhao, Ling
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (11): : 3127 - 3129
  • [44] The first complete chloroplast genome of Liparis nervosa and its phylogenetic position within Orchidaceae
    Wang, Xujun
    Guo, Wei
    Peng, Cuiying
    Liang, Junsheng
    Liang, Qidong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3752 - 3753
  • [45] The first complete chloroplast genome of Cyclamen persicum and its phylogenetic position within Primulaceae
    Zhang, Wenjie
    Ba, Jinlei
    Guo, Jiulin
    Jiang, Zhenxia
    Zhang, Zhaolei
    Cui, Zhitao
    MITOCHONDRIAL DNA PART B-RESOURCES, 2024, 9 (07): : 939 - 942
  • [46] The first complete chloroplast genome of Hylomecon japonica and its phylogenetic position within Papaveraceae
    Zhang, Yonghua
    Lee, Joongku
    Liu, Xuelian
    Sun, Zhongshuai
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2349 - 2350
  • [47] Complete chloroplast genome sequence of Heritiera angustata (Malvaceae): an endangered slant species
    Zhao, Kun-Kun
    Wang, Jian-Hua
    Cai, Ya-Cheng
    Zhu, Zhi-Xin
    Lopez-Pujol, Jordi
    Wang, Hua-Feng
    MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01): : 141 - 142
  • [48] The complete chloroplast genome sequence of Hibicus syriacus L. 'Mamonde' (Malvaceae)
    Kim, Yongsung
    Oh, Yu Jin
    Han, Kweon Young
    Kim, Geun Ho
    Ko, Jaeyoung
    Park, Jongsun
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 558 - 559
  • [49] Complete Chloroplast Genome Sequence of Hibiscus cannabinus and Comparative Analysis of the Malvaceae Family
    Cheng, Yan
    Zhang, Liemei
    Qi, Jianmin
    Zhang, Liwu
    FRONTIERS IN GENETICS, 2020, 11
  • [50] Characterization of the complete chloroplast genome sequence of Pistia stratiotes (Araceae) and its phylogenetic implications
    Quan, Guoming
    Chen, Lushu
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 2168 - 2169