The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position

被引:5
|
作者
Wong, Xue Jing [1 ]
Law, Douglas [1 ]
Wang, Zheng-Feng [2 ]
Ramaiya, Shiamala Devi [3 ]
Lee, Shiou Yih [1 ]
机构
[1] INTI Int Univ, Fac Hlth & Life Sci, Nilai 71800, Negeri Sembilan, Malaysia
[2] Chinese Acad Sci, Guangdong Prov Key Lab Appl Bot, South China Bot Garden, Guangzhou, Peoples R China
[3] Univ Putra Malaysia Bintulu, Fac Agr & Forestry Sci, Dept Crop Sci, Sarawak Campus, Bintulu, Malaysia
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 09期
关键词
Durian; Durioneae; genomic resource; next-generation sequencing; phylogenomics; COMPLETE PLASTOME SEQUENCE;
D O I
10.1080/23802359.2022.2123256
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Durio oxleyanus (Griff) of Malvaceae is considered a natural heritage by the countries that produce it, including Peninsular Malaysia, Sumatra, and Borneo. Even though the species is regarded as a commercially valuable fruit, cultivation of this species is uncommon. The dwindling population of this species in the wild has put its survival in jeopardy. Conservation efforts are required for this species, which are limited. In this study, the complete chloroplast (cp) genome of D. oxleyanus was assembled and characterized as a genomic resource for conservation programs. The complete cp genome size was 164,831 bp in length, with a pair of inverted repeats of 23,782 bp each, separating the 96,446-bp large and the 20,823-bp small single copies. A total of 135 genes were predicted, which consisted of 90 protein-coding, 37 tRNA, and eight rRNA genes. The overall GC content was 35.8%. The phylogenetic analysis based on the maximum-likelihood and Bayesian inference methods revealed that D. oxleyanus is closely related to D. zibethinus. The genomic data obtained will be useful for future studies of Malvaceae's phylogenetics and evolution.
引用
收藏
页码:1709 / 1712
页数:4
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