The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position

被引:5
|
作者
Wong, Xue Jing [1 ]
Law, Douglas [1 ]
Wang, Zheng-Feng [2 ]
Ramaiya, Shiamala Devi [3 ]
Lee, Shiou Yih [1 ]
机构
[1] INTI Int Univ, Fac Hlth & Life Sci, Nilai 71800, Negeri Sembilan, Malaysia
[2] Chinese Acad Sci, Guangdong Prov Key Lab Appl Bot, South China Bot Garden, Guangzhou, Peoples R China
[3] Univ Putra Malaysia Bintulu, Fac Agr & Forestry Sci, Dept Crop Sci, Sarawak Campus, Bintulu, Malaysia
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 09期
关键词
Durian; Durioneae; genomic resource; next-generation sequencing; phylogenomics; COMPLETE PLASTOME SEQUENCE;
D O I
10.1080/23802359.2022.2123256
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Durio oxleyanus (Griff) of Malvaceae is considered a natural heritage by the countries that produce it, including Peninsular Malaysia, Sumatra, and Borneo. Even though the species is regarded as a commercially valuable fruit, cultivation of this species is uncommon. The dwindling population of this species in the wild has put its survival in jeopardy. Conservation efforts are required for this species, which are limited. In this study, the complete chloroplast (cp) genome of D. oxleyanus was assembled and characterized as a genomic resource for conservation programs. The complete cp genome size was 164,831 bp in length, with a pair of inverted repeats of 23,782 bp each, separating the 96,446-bp large and the 20,823-bp small single copies. A total of 135 genes were predicted, which consisted of 90 protein-coding, 37 tRNA, and eight rRNA genes. The overall GC content was 35.8%. The phylogenetic analysis based on the maximum-likelihood and Bayesian inference methods revealed that D. oxleyanus is closely related to D. zibethinus. The genomic data obtained will be useful for future studies of Malvaceae's phylogenetics and evolution.
引用
收藏
页码:1709 / 1712
页数:4
相关论文
共 50 条
  • [1] The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position
    Yu, Xiang-Qin
    Zhang, Qiong
    Jiang, Yin-Zi
    Peng, Hua
    Zhao, Jian-Li
    Yang, Shi-Xiong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 3807 - 3809
  • [2] Complete chloroplast genome sequence of Mucuna prurien and its phylogenetic position
    Yuan, Xiao-Long
    Zha, Dao-Xi
    Xue, Lin
    Wang, Xue-Ying
    Xu, Gang
    Li, Wen-Bao
    Xu, Hai-Qing
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (09): : 2480 - 2481
  • [3] The complete chloroplast genome of Diplodiscus trichospermus and phylogenetic position of Brownlowioideae within Malvaceae
    Wu, Mingsong
    He, Liu
    Ma, Guangyao
    Zhang, Kai
    Yang, Haijian
    Yang, Xinquan
    BMC GENOMICS, 2023, 24 (01)
  • [4] The complete chloroplast genome of Diplodiscus trichospermus and phylogenetic position of Brownlowioideae within Malvaceae
    Mingsong Wu
    Liu He
    Guangyao Ma
    Kai Zhang
    Haijian Yang
    Xinquan Yang
    BMC Genomics, 24
  • [5] The complete chloroplast genome sequence of Chrysojasminum subhumile and its phylogenetic position within Oleaceae
    Ling, Xinyu
    Liao, Rui
    Zhu, Xingfu
    MITOCHONDRIAL DNA PART B-RESOURCES, 2023, 8 (06): : 678 - 681
  • [6] The complete chloroplast genome sequence of Althaea rosea (L.) Cavan. (Malvaceae) and its phylogenetic analysis
    Qian, Jun
    Du, Zefei
    Jiang, Yuan
    Duan, Baozhong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1433 - 1434
  • [7] The complete chloroplast genome sequence of Hibiscus sabdariffa (Malvaceae)
    KWON, Soon-Ho
    PARK, Yunmi
    JANG, You Lim
    KWON, Hae-Yun
    KOREAN JOURNAL OF PLANT TAXONOMY, 2022, 52 (02): : 123 - 126
  • [8] Characterization of the complete chloroplast genome sequence of Firmiana pulcherrima (Malvaceae)
    Jian-Hua Wang
    Ya-Cheng Cai
    Kun-Kun Zhao
    Zhi-Xin Zhu
    Ren-Chao Zhou
    Hua-Feng Wang
    Conservation Genetics Resources, 2018, 10 : 445 - 448
  • [9] Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae
    Si, Hao
    Li, Rui
    Zhang, Qingde
    Liu, Luxian
    MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (05): : 819 - 821
  • [10] The complete chloroplast genome sequence and phylogenetic position of Aconitum quelpaertense Nakai (Ranunculaceae)
    Kim, Tae-Hee
    Ha, Young-Ho
    Lee, Se Ryeong
    Kim, Sang-Chul
    Lee, Jungsim
    Kim, Dong-Kap
    Kim, Hyuk-Jin
    JOURNAL OF ASIA-PACIFIC BIODIVERSITY, 2023, 16 (02) : 282 - 286