Carboxylicivirga marinus sp. nov., Isolated From Marine Sediment, and Genome Insight of the Genus Carboxylicivirga

被引:0
|
作者
Zhang, Tian-Shu [1 ]
Zhang, Ya-Ning [1 ]
Lu, De-Chen [1 ]
Gong, Ya [1 ,2 ]
Du, Zong-Jun [1 ,2 ]
机构
[1] Shandong Univ, Marine Coll, Weihai, Peoples R China
[2] Shandong Univ, State Key Lab Microbial Technol, Qingdao, Peoples R China
基金
中国博士后科学基金; 中国国家自然科学基金;
关键词
Carboxylicivirga; 16S rRNA gene; polyphasic taxonomy; draft genome sequencing; genome analysis; SEQUENCE; RECLASSIFICATION; ALIGNMENT;
D O I
10.3389/fmars.2021.731212
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
A Gram-stain-negative, facultatively aerobic, beige and slender bacterium, designed N1Y132(T), was isolated from a sediment sample taken from coastal zone of Weihai, China (37 degrees 34 ' 31.44 '' N, 122 degrees 9 ' 15 '' E). Growth occurred at 15-33 degrees C (optimal 25-28 degrees C), at pH 6.5-8.5 (optimal pH 7.5), in 0-9% (w/v) NaCl (optimal 2.0-2.5%). According to the phylogenetic analysis based on the 16S rRNA gene sequences, strain N1Y132(T) showed the highest sequence similarity (97.9%) with Carboxylicivirga taeanensis JCM 19490(T), followed by C. sediminis JR1(T) (97.4%), C. mesophila JCM 18290(T) (96.4%) and C. linearis FB218(T) (95.1%). Thus, strain N1Y132(T) was a member of the genus Carboxylicivirga. The average nucleotide identity (ANI) values between strain N1Y132(T) and C. sediminis JR1(T), C. linearis FB218(T) and C. mesophila JCM 18290(T) were 74.8%, 71.1%, and 74.9%, respectively. Chemotaxonomic analysis showed that the sole respiratory quinone was MK-7 and the major fatty acids (> 5.0%) included iso-C-15(:)0, anteiso-C-15(:)0, iso-C-13(:)0, iso-C-14(:)0, iso-C-15(:)0 3-OH, and C-15(:)1 omega 6c. The polar lipids were consisted of a phosphatidylethanolamine, two phosphoaminolipids and six unidentified lipids. The DNA G + C content was 38.1 mol%. Based on the evidence presented in this study, strain N1Y132(T) represents a novel species of the genus Carboxylicivirga, for which the name Carboxylicivirga marinus sp. nov. is proposed. The type strain is N1Y132(T) (= KCTC 72934(T) = MCCC 1H00431(T)).
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页数:10
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