The fluorescence quantum yield parameter in Forster resonance energy transfer (FRET)-Meaning, misperception, and molecular design

The fluorescence quantum yield parameter in Forster resonance energy transfer (FRET) processes underpins vital phenomena ranging from light harvesting in photosynthesis to design of sensors for monitoring physiological processes. The criteria for choosing a donor for use in FRET processes include chemical features (solubility, bioconjugatability, synthetic accessibility, and stability) as well as photophysical properties pertaining to absorption (wavelength and molar absorption coefficient) and fluorescence (wavelength and fluorescence quantum yield). The value of the donor fluorescence quantum yield (phi f, or emphatically, phi f(D)) alone has sometimes been thought (erroneously) to place a ceiling on the possible quantum yield of energy transfer (phi trans). A high value of the donor phi f, while attractive, is not at all essential; indeed, many valuable candidates for use as FRET donors have likely been excluded on the basis of this injudiciously applied filter. Such disregard is unwarranted. In this tutorial overview, the equations for FRET are reviewed along with pertinent core concepts in photophysics. An analogy using simple hydraulics provides a pedagogical tool for the non-aficionado to better understand photochemical kinetics. Ten examples are presented of donor-acceptor systems with donors that exhibit a range of phi f values (0.60, 0.59. 0.21, 0.17, 0.12, 0.118, 0.04, 0.018, 0.007, and 0.003; i.e., 60%-0.3%), yet for each corresponding donor-acceptor pair, the value of phi trans is at least 0.70 and in some cases nearly 1.00 (i.e., 70%-100%). The systems encompass protein, synthetic inorganic, and synthetic organic architectures. The objectives of this illustrative review are to deepen understanding of FRET and to broaden molecular design considerations by enabling selection from among a far richer set of donors for use in FRET processes. Published under license by AIP Publishing