A fast and effective conformational search method for peptides

被引:3
|
作者
Arkin, H [1 ]
Çelik, T [1 ]
机构
[1] Hacettepe Univ, Dept Engn Phys, TR-06532 Ankara, Turkey
来源
关键词
conformation sampling; energy landscape paving; peptides; energy minimization;
D O I
10.1142/S0129183103005121
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
We propose a hybrid algorithm, which combines the features of the energy landscape paving (ELP) and Monte Carlo Minimization (MCM) methods. We have tested its performance in studying the low-energy conformations of the heptapeptide deltorphin.
引用
收藏
页码:985 / 991
页数:7
相关论文
共 50 条
  • [31] Method of fast maximum search on the bearing landscape
    Nechaev Y.B.
    Zotov S.A.
    Radioelectronics and Communications Systems, 2010, 53 (01) : 14 - 19
  • [32] A fast parallel search method for large dictionaries
    Torres, MA
    Kuroyanagi, S
    Iwata, A
    SOFTWARE ENGINEERING FOR PARALLEL AND DISTRIBUTED SYSTEMS - INTERNATIONAL SYMPOSIUM PROCEEDINGS, 1998, : 207 - 214
  • [33] Fast Search Method for Large Polarization Kernels
    Trofimiuk, Grigorii
    IEEE TRANSACTIONS ON COMMUNICATIONS, 2024, 72 (01) : 75 - 84
  • [34] A Fast Search Method for Encrypted Medical Data
    Tian, Ye
    Lei, Hao
    Wang, Liming
    Zeng, Ke
    Fukushima, Toshikazu
    2009 IEEE INTERNATIONAL CONFERENCE ON COMMUNICATION WORKSHOPS, VOLS 1 AND 2, 2009, : 116 - 120
  • [35] A fast conformational search strategy for finding low energy structures of model proteins
    Beutler, TC
    Dill, KA
    PROTEIN SCIENCE, 1996, 5 (10) : 2037 - 2043
  • [36] Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches
    Senter, Evan
    Sheikh, Saad
    Dotu, Ivan
    Ponty, Yann
    Clote, Peter
    PLOS ONE, 2012, 7 (12):
  • [37] CONFORMATIONAL SEARCH USING A PARALLEL FAST MESSY GA WITH MIGRATION AND PARALLEL SELECTION
    MERKLE, LD
    GATES, GH
    LAMONT, GB
    PACHTER, R
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1995, 209 : 98 - COMP
  • [38] An Improved Struck Tracking Method Based on Fast Search Method
    Ni Yunfeng
    Xu Li
    Hou Ying
    PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON LOGISTICS, ENGINEERING, MANAGEMENT AND COMPUTER SCIENCE (LEMCS 2015), 2015, 117 : 1473 - 1478
  • [39] A Radial Search Method for Fast Nearest Neighbor Search on Range Images
    Tombari, Federico
    Salti, Samuele
    Puglia, Luca
    Raiconi, Giancarlo
    Di Stefano, Luigi
    COMPUTER VISION - ECCV 2016 WORKSHOPS, PT III, 2016, 9915 : 563 - 577
  • [40] An effective suggestion method for keyword search of databases
    Hai Huang
    Zonghai Chen
    Chengfei Liu
    He Huang
    Xiangliang Zhang
    World Wide Web, 2017, 20 : 729 - 747