A fast and effective conformational search method for peptides

被引:3
|
作者
Arkin, H [1 ]
Çelik, T [1 ]
机构
[1] Hacettepe Univ, Dept Engn Phys, TR-06532 Ankara, Turkey
来源
关键词
conformation sampling; energy landscape paving; peptides; energy minimization;
D O I
10.1142/S0129183103005121
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
We propose a hybrid algorithm, which combines the features of the energy landscape paving (ELP) and Monte Carlo Minimization (MCM) methods. We have tested its performance in studying the low-energy conformations of the heptapeptide deltorphin.
引用
收藏
页码:985 / 991
页数:7
相关论文
共 50 条
  • [21] Low mode search. An efficient, automated computational method for conformational analysis: Application to cyclic and acyclic alkanes and cyclic peptides
    Kolossvary, I
    Guida, WC
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (21) : 5011 - 5019
  • [22] A fast and effective method for motion estimation
    Chen, YK
    Chen, TC
    2004 IEEE INTERNATIONAL CONFERENCE ON MULTIMEDIA AND EXP (ICME), VOLS 1-3, 2004, : 547 - 550
  • [23] BACKBONE CYCLIZATION - A NEW METHOD FOR CONFERRING CONFORMATIONAL CONSTRAINT ON PEPTIDES
    GILON, C
    HALLE, D
    CHOREV, M
    SELINGER, Z
    BYK, G
    BIOPOLYMERS, 1991, 31 (06) : 745 - 750
  • [24] Fast and effective method for stereo matching
    Dong, Yu-Ning
    Nanjing Youdian Daxue Xuebao (Ziran Kexue Ban), 2007, 3 (28-33): : 28 - 33
  • [25] A fast method to sample real protein conformational space
    Feldman, HJ
    Hogue, CWV
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2000, 39 (02) : 112 - 131
  • [26] A fast no search fractal image coding method
    Shen, FR
    Hasegawa, O
    SIGNAL PROCESSING-IMAGE COMMUNICATION, 2004, 19 (05) : 393 - 404
  • [27] A codebook design method for fast VQ search
    Skinnemoen, H
    1996 IEEE DIGITAL SIGNAL PROCESSING WORKSHOP, PROCEEDINGS, 1996, : 283 - 286
  • [28] Fast Method for ENF Database Build and Search
    Pop, Gheorghe
    Draghicescu, Dragos
    Burileanu, Dragos
    Cucu, Horia
    Burileanu, Corneliu
    2017 INTERNATIONAL CONFERENCE ON SPEECH TECHNOLOGY AND HUMAN-COMPUTER DIALOGUE (SPED), 2017,
  • [29] The search for low energy conformational families of small peptides: Searching for active conformations of small peptides in the absence of a known receptor
    Lexa, Katrina W.
    Alser, Katherine A.
    Salisburg, Amanda M.
    Ellens, Damien J.
    Hernandez, Lorena
    Bono, Sam J.
    Michael, Heather C.
    Derby, Jennifer R.
    Skiba, Jaime G.
    Feldgus, Steven
    Kirschner, Karl N.
    Shields, George C.
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2007, 107 (15) : 3001 - 3012
  • [30] A fast-search motion estimation method
    Roan, YT
    Chen, PY
    SMC 2000 CONFERENCE PROCEEDINGS: 2000 IEEE INTERNATIONAL CONFERENCE ON SYSTEMS, MAN & CYBERNETICS, VOL 1-5, 2000, : 1568 - 1573