BrainProfileDB - a platform for integration of functional genomics data

被引：7
|
作者：
Schuchhardt, Johannes [1 ]
Glintschert, Alexander [1 ]
Hartl, Daniela [2 ]
Irmler, Martin [3 ]
Beckers, Johannes [3 ,4 ]
Stephan, Christian [5 ]
Marcus, Katrin [5 ]
Klose, Joachim [2 ]
Meyer, Helmut E. [5 ]
Malik, Arif [1 ]
机构：
[1] Microdiscovery GmbH, D-10405 Berlin, Germany
[2] Charite, Inst Human Genet, D-13353 Berlin, Germany
[3] German Res Ctr Environm Hlth, Helmholtz Zentrum Munchen, Inst Expt Genet, Neuherberg, Germany
[4] Tech Univ Munich, Ctr Life & Food Sci Weihenstephan, Chair Expt Genet, Weihenstephan, Germany
[5] Ruhr Univ Bochum, Med Proteom Ctr, Bochum, Germany
来源：
PROTEOMICS | 2008年 / 8卷 / 06期
关键词：
data analysis; functional genomics database; high-throughput data management; integrating genomics and proteomics; neurodegenerative diseases;
D O I：
10.1002/pmic.200700743
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
BrainProfileDB is a database system for integrating large sets of high throughput functional genomics data of the Human Brain Proteome Project (HBPP). Within HBPP (http://www.smp.proteomics.de/) the molecular pathology of neurodegenerative diseases is investigated, using complementary methods from transcriptomics, proteomics, toponomics and interaction measurements. Aim of the database system is to provide a broad spectrum of scientific users joined in the consortium with a practical integrated view on their data. Employing appropriate mapping techniques and levels of data representation the user is relieved from technical details of gene identification or experimental measurement technique.
引用
收藏
页码：1162 / 1164
页数：3
相关论文
共 50 条
  • [41] Functional annotation and network reconstruction through cross-platform integration of microarray data
    Xianghong Jasmine Zhou
    Ming-Chih J Kao
    Haiyan Huang
    Angela Wong
    Juan Nunez-Iglesias
    Michael Primig
    Oscar M Aparicio
    Caleb E Finch
    Todd E Morgan
    Wing Hung Wong
    Nature Biotechnology, 2005, 23 (2) : 238 - 243
  • [42] Intersystems Integration platform for Data and Processes
    不详
    BWK, 2011, 63 (04): : 19 - 19
  • [43] INTEGRATION OF GEOSCIENTIFIC DATA TO GIS PLATFORM
    Guven, Ismail Talih
    12th International Conference - Standardization, Prototypes and Quality: A Means of Balkan Countries' Collaboration, 2015, : 263 - 268
  • [44] Booly: a new data integration platform
    Long H Do
    Francisco F Esteves
    Harvey J Karten
    Ethan Bier
    BMC Bioinformatics, 11
  • [45] Data integration platform for village emergency
    Ying W.
    Daoping W.
    Guangli L.
    Di L.
    International Journal of Digital Content Technology and its Applications, 2010, 4 (04) : 215 - 217
  • [46] Booly: a new data integration platform
    Do, Long H.
    Esteves, Francisco F.
    Karten, Harvey J.
    Bier, Ethan
    BMC BIOINFORMATICS, 2010, 11
  • [47] Developing a functional genomics platform to interrogate rare pediatric cancers
    Hong, Andrew L.
    Cowley, Glenn S.
    Tseng, Yuen-Yi
    Cheah, Jaime H.
    Jonas, Oliver
    Doshi, Mihir B.
    Kynnap, Bryan D.
    Oh, Coyin
    Meyer, Stephanie
    Clemons, Paul
    Burger, Michael
    Vazquez, Francisca
    Weir, Barbara
    Kryukov, Gregory V.
    Church, Alanna
    Imamovic, Alma
    Tsherniak, Aviad
    Bielski, Craig
    Crompton, Brian
    Mullen, Elizabeth
    Roberts, Charles
    Rodriguez-Galindo, Carlos
    Janeway, Katherine A.
    Stegmaier, Kimberly
    van Hummelen, Paul
    Langer, Robert
    Garraway, Levi A.
    Schreiber, Stuart L.
    Root, David E.
    Boehm, Jesse S.
    Hahn, William C.
    CANCER RESEARCH, 2016, 76
  • [48] RIKEN Cassava Initiative: Establishment of a Cassava Functional Genomics Platform
    Utsumi, Yoshinori
    Sakurai, Tetsuya
    Umemura, Yoshimi
    Ayling, Sarah
    Ishitani, Manabu
    Narangajavana, Jarunya
    Sojikul, Punchapat
    Triwitayakorn, Kanokporn
    Matsui, Minami
    Manabe, Ri-ichiroh
    Shinozaki, Kazuo
    Seki, Motoaki
    TROPICAL PLANT BIOLOGY, 2012, 5 (01) : 110 - 116
  • [49] Analysis of the Sinorhizobium meliloti 1021 ORFeome in a functional Genomics Platform
    Schroeder, B. K.
    House, B. L.
    Mortimer, M. W.
    Warren, K. L.
    Maloney, S. C.
    Ziemkiewicz, H. T.
    Bovitz, J. J.
    Yurgel, S.
    Kahn, M. L.
    PHYTOPATHOLOGY, 2004, 94 (06) : S93 - S94
  • [50] Development of a functional genomics platform for Sinorhizobium meliloti:: Construction of an ORFeome
    Schroeder, BK
    House, BL
    Mortimer, MW
    Yurgel, SN
    Maloney, SC
    Ward, KL
    Kahn, ML
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (10) : 5858 - 5864
12345