Calibrating Functional Parameters in the Ion Channel Models of Cardiac Cells

被引:43
|
作者
Plumlee, Matthew [1 ]
Joseph, V. Roshan [1 ]
Yang, Hui [1 ]
机构
[1] Univ Michigan, Dept Ind & Operat Engn, Ann Arbor, MI 48109 USA
基金
美国国家科学基金会;
关键词
Calibration; Computer experiment; Functional response; High-dimensional parameters; Simulation experiment; COMPUTER-MODEL; MODULATION; EQUATIONS; DESIGN;
D O I
10.1080/01621459.2015.1119695
中图分类号
O21 [概率论与数理统计]; C8 [统计学];
学科分类号
020208 ; 070103 ; 0714 ;
摘要
Computational modeling is a popular tool to understand a diverse set of complex systems. The output from a computational model depends on a set of parameters that are unknown to the designer, but a modeler can estimate them by collecting physical data. In the described study of the ion channels of ventricular myocytes, the parameter of interest is a function as opposed to a scalar or a set of scalars. This article develops a new modeling strategy to nonparametrically study the functional parameter using Bayesian inference with Gaussian process prior distributions. A new sampling scheme is devised to address this unique problem.
引用
收藏
页码:500 / 509
页数:10
相关论文
共 50 条
  • [21] Novel functional artificial ion channel
    Voyer, N.
    Robitaille, M.
    Journal of the American Chemical Society, 1995, 117 (24)
  • [22] Functional anatomy of an unusual ion channel
    Scott, Robert L.
    Nash, Howard A.
    Allada, Ravi
    Lear, Bridget C.
    JOURNAL OF NEUROGENETICS, 2006, 20 (3-4) : 216 - 217
  • [23] A compartmental model of an identified Drosophila larval motoneuron for investigating functional effects of ion channel parameters
    Cengiz Günay
    Logesh Dharmar
    Fred Sieling
    Richard A Baines
    Astrid A Prinz
    BMC Neuroscience, 13 (Suppl 1)
  • [24] Glutamate receptor ion channel models
    Kadavil, JA
    Maranto, AR
    Lin, TK
    Kalivretenos, AG
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1996, 211 : 294 - CHED
  • [25] Model-driven optimal experimental design for calibrating cardiac electrophysiology models
    Lei, Chon Lok
    Clerx, Michael
    Gavaghan, David J.
    Mirams, Gary R.
    COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2023, 240
  • [26] Calibrating cardiac electrophysiology models using latent Gaussian processes on atrial manifolds
    Sam Coveney
    Caroline H. Roney
    Cesare Corrado
    Richard D. Wilkinson
    Jeremy E. Oakley
    Steven A. Niederer
    Richard H. Clayton
    Scientific Reports, 12
  • [27] Relationship between ion channel dynamics and action potential alternans and memory in cardiac cells
    Li, MY
    Otani, NF
    BIOPHYSICAL JOURNAL, 2002, 82 (01) : 92A - 92A
  • [28] Calibrating cardiac electrophysiology models using latent Gaussian processes on atrial manifolds
    Coveney, Sam
    Roney, Caroline H.
    Corrado, Cesare
    Wilkinson, Richard D.
    Oakley, Jeremy E.
    Niederer, Steven A.
    Clayton, Richard H.
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [29] A methodology for calibrating parameters in discrete element models based on machine learning surrogates
    Irazabal, Joaquin
    Salazar, Fernando
    Vicente, David J.
    COMPUTATIONAL PARTICLE MECHANICS, 2023, 10 (05) : 1031 - 1047
  • [30] Calibrating Physical Parameters in House Models Using Aggregate AC Power Demand
    Sun, Yannan
    Stevens, Andrew
    Lian, Jianming
    Lu, Shuai
    2017 IEEE POWER & ENERGY SOCIETY GENERAL MEETING, 2017,