Icy: an open bioimage informatics platform for extended reproducible research

被引：0

作者：

de Chaumont, Fabrice ^{[1
]}

Dallongeville, Stephane ^{[1
]}

Chenouard, Nicolas ^{[1
]}

Herve, Nicolas ^{[1
]}

Pop, Sorin ^{[1
]}

Provoost, Thomas ^{[1
]}

Meas-Yedid, Vannary ^{[1
]}

Pankajakshan, Praveen ^{[1
]}

Lecomte, Timothee ^{[1
]}

Le Montagner, Yoann ^{[1
]}

Lagache, Thibault ^{[1
]}

Dufour, Alexandre ^{[1
]}

Olivo-Marin, Jean-Christophe ^{[1
]}

机构：

[1] Inst Pasteur, CNRS, Unite Rech Associee 2582, Unite Anal Images Quantitat, Paris, France

来源：

NATURE METHODS | 2012年 / 9卷 / 07期

关键词：

ENTAMOEBA-HISTOLYTICA; TRACKING; MICROSCOPY; MODEL; IMAGES; CELLS;

D O I：

10.1038/NMETH.2075

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Current research in biology uses evermore complex computational and imaging tools. Here we describe Icy, a collaborative bioimage informatics platform that combines a community website for contributing and sharing tools and material, and software with a high-end visual programming framework for seamless development of sophisticated imaging workflows. I Icy extends the reproducible research principles, by encouraging and facilitating the reusability, modularity, standardization and management of algorithms and protocols. Icy is free, open-source and available at http://icy.bioimageanalysis.org/.

引用

页码：690 / 696

页数：7

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