BnTIR: an online transcriptome platform for exploring RNA-seq libraries for oil crop Brassica napus

被引:83
|
作者
Liu, Dongxu [1 ,2 ,3 ]
Yu, Liangqian [1 ,3 ]
Wei, Lulu [2 ,3 ]
Yu, Pugang [1 ,3 ]
Wang, Jing [2 ,3 ]
Zhao, Hu [1 ,3 ]
Zhang, Yuting [1 ,3 ]
Zhang, Shuntai [4 ]
Yang, Zhiquan [2 ,3 ]
Chen, Guanqun [5 ]
Yao, Xuan [2 ,3 ]
Yang, Yanjun [4 ]
Zhou, Yongming [1 ]
Wang, Xuemin [6 ,7 ]
Lu, Shaoping [1 ,3 ]
Dai, Cheng [1 ,3 ]
Yang, Qing-Yong [1 ,2 ,3 ]
Guo, Liang [1 ,3 ]
机构
[1] Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Wuhan, Peoples R China
[2] Huazhong Agr Univ, Coll Informat, Hubei Key Lab Agr Bioinformat, Wuhan, Peoples R China
[3] Hubei Hongshan Lab, Wuhan, Peoples R China
[4] Huazhong Agr Univ, Coll Humanities & Social Sci, Wuhan, Peoples R China
[5] Univ Alberta, Dept Agr Food & Nutr Sci, Edmonton, AB, Canada
[6] Univ Missouri, Dept Biol, St Louis, MO 63121 USA
[7] Donald Danforth Plant Sci Ctr, St Louis, MO USA
关键词
Brassica napus; transcriptome; Co-expression; database; DATABASE;
D O I
10.1111/pbi.13665
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
[No abstract available]
引用
收藏
页码:1895 / 1897
页数:3
相关论文
共 50 条
  • [41] Combined BSA-Seq and RNA-Seq Analysis to Identify Candidate Genes Associated with Aluminum Toxicity in Rapeseed (Brassica napus L.)
    Zhou, Huiwen
    Yu, Paolan
    Wu, Lanhua
    Han, Depeng
    Wu, Yang
    Zheng, Wei
    Zhou, Qinghong
    Xiao, Xiaojun
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (20)
  • [42] Joint RNA-Seq and miRNA Profiling Analyses to Reveal Molecular Mechanisms in Regulating Thickness of Pod Canopy in Brassica napus
    Chen, Zhiyou
    Huo, Qiang
    Yang, Hong
    Jian, Hongju
    Qu, Cunmin
    Lu, Kun
    Li, Jiana
    GENES, 2019, 10 (08)
  • [43] RNA-Seq Analysis of Transcriptome and Glucosinolate Metabolism in Seeds and Sprouts of Broccoli (Brassica oleracea var. italic)
    Gao, Jinjun
    Yu, Xinxin
    Ma, Fengming
    Li, Jing
    PLOS ONE, 2014, 9 (02):
  • [44] QTL analysis and candidate gene prediction for seed density per silique by QTL-seq and RNA-seq in spring Brassica napus L.
    Xing, Xiaorong
    Liu, Haidong
    Ye, Jingxiu
    Yao, Yanmei
    Li, Kaixiang
    Li, Yanling
    Du, Dezhi
    PLOS ONE, 2023, 18 (03):
  • [45] Identification of a major QTL and candidate genes analysis for branch angle in rapeseed (Brassica napus L.) using QTL-seq and RNA-seq
    Lei, Shaolin
    Chen, Li
    Liang, Fenghao
    Zhang, Yuling
    Zhang, Chao
    Xiao, Huagui
    Tang, Rong
    Yang, Bin
    Wang, Lulu
    Jiang, Huanhuan
    FRONTIERS IN PLANT SCIENCE, 2024, 15
  • [46] Bulk segregant analysis-sequencing and RNA-Seq analyses reveal candidate genes associated with albino phenotype in Brassica napus
    Ye, Shenhua
    Yang, Jie
    Huang, Yingying
    Liu, Jie
    Ma, Xiaowei
    Zhao, Lun
    Ma, Chaozhi
    Tu, Jinxing
    Shen, Jinxiong
    Fu, Tingdong
    Wen, Jing
    FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [47] Insecticidal Activity of Melaleuca alternifolia Essential Oil and RNA-Seq Analysis of Sitophilus zeamais Transcriptome in Response to Oil Fumigation
    Liao, Min
    Xiao, Jin-Jing
    Zhou, Li-Jun
    Liu, Yang
    Wu, Xiang-Wei
    Hua, Ri-Mao
    Wang, Gui-Rong
    Cao, Hai-Qun
    PLOS ONE, 2016, 11 (12):
  • [48] Identification of a candidate QTG for seed number per silique by integrating QTL mapping and RNA-seq in Brassica napus L.
    Shuangshuang Xin
    Hongli Dong
    Yixin Cui
    Yilin Liu
    Guifu Tian
    Nanxi Deng
    Huafang Wan
    Zhi Liu
    Xiaorong Li
    Wei Qian
    The Crop Journal, 2023, 11 (01) : 189 - 197
  • [49] Identification of a candidate QTG for seed number per silique by integrating QTL mapping and RNA-seq in Brassica napus L.
    Xin, Shuangshuang
    Dong, Hongli
    Cui, Yixin
    Liu, Yilin
    Tian, Guifu
    Deng, Nanxi
    Wan, Huafang
    Liu, Zhi
    Li, Xiaorong
    Qian, Wei
    CROP JOURNAL, 2023, 11 (01): : 189 - 197
  • [50] Integrated BSA-seq and RNA-seq analysis to identify candidate genes associated with nitrogen utilization efficiency (NUtE) in rapeseed (Brassica napus L.)
    Nan, Yunyou
    Xie, Yuyu
    He, Huiying
    Wu, Han
    Gao, Lixing
    Atif, Ayub
    Zhang, Yanfeng
    Tian, Hui
    Hui, Jing
    Gao, Yajun
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2024, 254